Motif IL_68780.1 Version IL_68780.1 of this group appears in releases 3.3 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 5-6 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BW0_001 | 4BW0 | 0.1141 | 1 | Kink-turn | A | HMKT-7 | G | 3 | G | 4 | G | 5 | A | 6 | G | 7 | * | C | 16 | G | 17 | A | 18 | G | 20 | A | 21 | A | 22 | C | 23 | cWW | tSH | tSH | ntSs | tHS | cWW |
| 2 | IL_5FJ4_002 | 5FJ4 | 0.0000 | 1 | Kink-turn | H | HMKT-7 | G | 3 | G | 4 | G | 5 | A | 6 | G | 7 | * | C | 26 | G | 27 | A | 28 | G | 30 | A | 31 | A | 32 | C | 33 | cWW | tSH | tSH | ntSs | tHS | cWW |
| 3 | IL_4CS1_002 | 4CS1 | 0.1587 | 1 | Kink-turn | A | 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3' | G | 13 | G | 14 | G | 15 | A | 16 | G | 17 | * | C | 3||||9_769 | G | 4||||9_769 | A | 5||||9_769 | G | 7||||9_769 | A | 8||||9_769 | A | 9||||9_769 | C | 10||||9_769 | cWW | tSH | tSH | ntSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAG*CGAAGAAC | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*GAAGAA | 3 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (3)
- Basepair signature
- cWW-tSH-tSH-tHS-tSS-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.10 | Max 0.17
Coloring options: