Motif IL_68945.1 Version IL_68945.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-8 | 5-6 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_115 | 1VWW | 0.0000 | 0 | 5 | 28S ribosomal RNA | U | 2893 | A | 2894 | A | 2895 | G | 2896 | G | 2897 | * | C | 3602 | G | 3603 | A | 3604 | C | 3605 | U | 3606 | U | 3607 | A | 3608 | ncWW | ncWH | cWW | |||||
| 2 | IL_2QBG_014 | 2QBG | 0.9437 | 1 | B | 23S rRNA | G | 359 | U | 360 | G | 361 | A | 362 | G | 363 | * | C | 274 | C | 275 | U | 276 | A | 278 | A | 279 | U | 280 | C | 281 | cWW | ncSW | tSH | ntHS | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAGG*CGACUUA | 1 |
| GUGAG*CCUGAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAG*GACUU | 1 |
| UGA*CUGAAU | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_68945.1 | Only in the parent motif |
|---|---|---|---|
| IL_53988.1 Compare | IL_2QBG_014 | IL_1VWW_115 |
Children motifs
| Child motif | Common motif instances | Only in IL_68945.1 | Only in the child motif |
|---|---|---|---|
| IL_40852.1 Compare | IL_2QBG_014 | IL_1VWW_115 |
- Annotations
- Basepair signature
- cWW-L-R-R-R-R-R-L-L-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: