#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 71-73-64-5
1 IL_2FQN_0022FQN0.00002A+BRNA (23-mer)C7G8C9U10*A38A39G42cWWcWWacWW
2 IL_4A1B_0704A1B0.27411126S RRNAG1648G1649U1650A1651*U1843U1844C1846cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGCU*AAAAG1
GGUA*UUUC1
Non-Watson-Crick part of the motif
SequenceCounts
GC*AAA1
GU*UU1

Release history

Release1.101.111.121.13
Date2014-01-042014-02-012014-03-012014-03-29
StatusNew id, 2 parentsExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_69106.1Only in the parent motif
IL_09348.6
Compare
IL_4A1B_070IL_2FQN_002IL_1NUV_002, IL_2QBG_108
IL_09520.3
Compare
IL_2FQN_002IL_4A1B_070IL_3U5F_017

Children motifs

Child motifCommon motif instancesOnly in IL_69106.1Only in the child motif
IL_69106.2
Compare
IL_2FQN_002, IL_4A1B_070IL_3U5F_017
Annotations
  • (2)
  • Basepair signature
    cWW-L-cWW-cWW
    Heat map statistics
    Min 0.27 | Avg 0.14 | Max 0.27
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