Motif IL_69106.1 Version IL_69106.1 of this group appears in releases 1.10 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2FQN_002 | 2FQN | 0.0000 | 2 | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW |
2 | IL_4A1B_070 | 4A1B | 0.2741 | 1 | 1 | 26S RRNA | G | 1648 | G | 1649 | U | 1650 | A | 1651 | * | U | 1843 | U | 1844 | C | 1846 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGCU*AAAAG | 1 |
GGUA*UUUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GC*AAA | 1 |
GU*UU | 1 |
Release history
Release | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|
Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_69106.1 | Only in the parent motif |
---|---|---|---|
IL_09348.6 Compare | IL_4A1B_070 | IL_2FQN_002 | IL_1NUV_002, IL_2QBG_108 |
IL_09520.3 Compare | IL_2FQN_002 | IL_4A1B_070 | IL_3U5F_017 |
Children motifs
Child motif | Common motif instances | Only in IL_69106.1 | Only in the child motif |
---|---|---|---|
IL_69106.2 Compare | IL_2FQN_002, IL_4A1B_070 | IL_3U5F_017 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.14 | Max 0.27
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