Motif IL_69271.2 Version IL_69271.2 of this group appears in releases 3.91 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9BZC_002 | 9BZC | 0.3303 | 2 | A | RNA (87-MER) | C | 12 | U | 13 | G | 14 | A | 15 | C | 16 | G | 17 | G | 18 | G | 21 | * | C | 33 | A | 34 | U | 35 | G | 36 | cWW | cwW | cWW |
| 2 | IL_5BTP_005 | 5BTP | 0.0000 | 3 | B | ZMP/ZTP riboswitch | C | 15 | U | 16 | G | 17 | A | 18 | C | 19 | G | 20 | G | 21 | G | 25 | * | C | 38 | A | 39 | U | 40 | G | 41 | cWW | cwW | cWW |
| 3 | IL_6WZR_002 | 6WZR | 0.0855 | 3 | A | ZMP/ZTP riboswitch | C | 15 | U | 16 | G | 17 | A | 18 | C | 19 | G | 20 | G | 21 | G | 25 | * | C | 38 | A | 39 | U | 40 | G | 41 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGACGGAACG*CAUG | 2 |
| CUGACGGAAG*CAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGACGGAAC*AU | 2 |
| UGACGGAA*AU | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-L-R
- Heat map statistics
- Min 0.09 | Avg 0.17 | Max 0.33
Coloring options: