Motif IL_70089.2 Version IL_70089.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_062 | 4CUV | 0.6422 | 1 | 1 | LSU rRNA | G | 1234 | U | 1235 | G | 1237 | C | 1238 | * | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | cWW | cWW | |
| 2 | IL_4W21_084 | 4W21 | 0.6321 | 1 | 5 | LSU rRNA | G | 1973 | U | 1974 | G | 1976 | C | 1977 | * | G | 1989 | A | 1990 | A | 1991 | U | 1992 | C | 1993 | cWW | cWW | |
| 3 | IL_1S72_044 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | G | 1163 | U | 1164 | A | 1166 | G | 1167 | * | C | 1179 | U | 1180 | A | 1181 | C | 1182 | C | 1183 | ncWW | ncWW | cWW |
| 4 | IL_3U5H_060 | 3U5H | 0.2580 | 1 | 5 | LSU rRNA | G | 1234 | U | 1235 | G | 1237 | C | 1238 | * | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGC*GAAUC | 3 |
| GUGAG*CUACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGG*AAU | 3 |
| UGA*UAC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70089.2 | Only in the parent motif |
|---|---|---|---|
| IL_70089.1 Compare | IL_4CUV_062, IL_1S72_044, IL_3U5H_060 | IL_4W21_084 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.26 | Avg 0.42 | Max 0.68
Coloring options: