Motif IL_70089.2 Version IL_70089.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8		9	1-9	3-6	4-5
1	IL_4CUV_062	4CUV	0.6422	1	1	LSU rRNA	G	1234	U	1235	G	1237	C	1238	*	G	1250	A	1251	A	1252	U	1253	C	1254	cWW		cWW
2	IL_4W21_084	4W21	0.6321	1	5	LSU rRNA	G	1973	U	1974	G	1976	C	1977	*	G	1989	A	1990	A	1991	U	1992	C	1993	cWW		cWW
3	IL_1S72_044	1S72	0.0000	1	0	LSU rRNA	G	1163	U	1164	A	1166	G	1167	*	C	1179	U	1180	A	1181	C	1182	C	1183	ncWW	ncWW	cWW
4	IL_3U5H_060	3U5H	0.2580	1	5	LSU rRNA	G	1234	U	1235	G	1237	C	1238	*	G	1250	A	1251	A	1252	U	1253	C	1254	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUGGC*GAAUC	3
GUGAG*CUACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGG*AAU	3
UGA*UAC	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_70089.2	Only in the parent motif
IL_70089.1 Compare	IL_4CUV_062, IL_1S72_044, IL_3U5H_060	IL_4W21_084

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-L-R-R-R-L-cWW
Heat map statistics: Min 0.26 | Avg 0.42 | Max 0.68

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Coloring options: Nucleotide numbers

Motif IL_70089.2 Version IL_70089.2 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_70089.2 Version IL_70089.2 of this group appears in releases 1.18 to 1.18

Download

Csv

Json