Motif IL_70089.1 Version IL_70089.1 of this group appears in releases 1.15 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_062 | 4CUV | 0.6422 | 1 | 1 | LSU rRNA | G | 1234 | U | 1235 | G | 1237 | C | 1238 | * | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | cWW | cWW | |
| 2 | IL_1S72_044 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | G | 1163 | U | 1164 | A | 1166 | G | 1167 | * | C | 1179 | U | 1180 | A | 1181 | C | 1182 | C | 1183 | ncWW | ncWW | cWW |
| 3 | IL_3U5H_060 | 3U5H | 0.2580 | 1 | 5 | LSU rRNA | G | 1234 | U | 1235 | G | 1237 | C | 1238 | * | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGC*GAAUC | 2 |
| GUGAG*CUACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGG*AAU | 2 |
| UGA*UAC | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_70089.1 | Only in the parent motif |
|---|---|---|---|
| IL_46306.1 Compare | IL_3U5H_060 | IL_4CUV_062, IL_1S72_044 | |
| IL_98566.1 Compare | IL_1S72_044 | IL_4CUV_062, IL_3U5H_060 | IL_2QBG_013 |
Children motifs
| Child motif | Common motif instances | Only in IL_70089.1 | Only in the child motif |
|---|---|---|---|
| IL_70089.2 Compare | IL_4CUV_062, IL_1S72_044, IL_3U5H_060 | IL_4W21_084 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-cWW-cWW
- Heat map statistics
- Min 0.26 | Avg 0.35 | Max 0.68
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