Motif IL_70237.6 Version IL_70237.6 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 4-10 | 5-6 | 6-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_154 | 4CUV | 0.1955 | 0 | 3 | 5S RRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | ntSW |
| 2 | IL_3U5H_147 | 3U5H | 0.1950 | 0 | 7 | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW |
| 3 | IL_1S72_102 | 1S72 | 0.0912 | 0 | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW |
| 4 | IL_4QCN_111 | 4QCN | 0.0000 | 0 | B | 5S Ribosomal RNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | A | 48 | ncSH | cWW | cWS | cWW | tSW |
| 5 | IL_1VX6_143 | 1VX6 | 0.1344 | 0 | B | 5S ribosomal RNA | A | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | A | 43 | C | 44 | U | 45 | ncSH | cWW | cWS | cWW | tSW |
| 6 | IL_1MJI_002 | 1MJI | 0.1764 | 0 | C | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ntSW | cWW | cWS | cWW | tSW |
| 7 | IL_4A1C_007 | 4A1C | 0.1878 | 0 | 3 | 5S RRNA | A | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | A | 43 | C | 44 | U | 45 | cWW | cWW | tSW | ||
| 8 | IL_1VWW_162 | 1VWW | 0.2879 | 0 | 7 | 5S ribosomal RNA | A | 32 | U | 33 | C | 34 | U | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | U | 45 | cSH | cWW | ncWS | cWW | tSW |
| 9 | IL_2QBG_004 | 2QBG | 0.4232 | 0 | A | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GAUCA | 2 |
| AUCCC*GAACU | 2 |
| ACCCC*GAACU | 2 |
| UACCC*GAACA | 1 |
| UUCCC*GAACA | 1 |
| AUCUC*GAUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCC*AAC | 3 |
| UCC*AUC | 2 |
| CCC*AAC | 2 |
| ACC*AAC | 1 |
| UCU*AUC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70237.6 | Only in the parent motif |
|---|---|---|---|
| IL_70237.5 Compare | IL_1S72_102, IL_4A1C_007, IL_4CUV_154, IL_1MJI_002, IL_2QBG_004, IL_3U5H_147 | IL_4QCN_111, IL_1VX6_143, IL_1VWW_162 | IL_4NVV_110 |
Children motifs
| Child motif | Common motif instances | Only in IL_70237.6 | Only in the child motif |
|---|---|---|---|
| IL_70237.7 Compare | IL_1S72_102, IL_4A1C_007, IL_4CUV_154, IL_4QCN_111, IL_1VX6_143, IL_1MJI_002, IL_2QBG_004, IL_3U5H_147 | IL_1VWW_162 | IL_4W21_172 |
- Annotations
-
- (9)
- Basepair signature
- cWW-L-L-cWS-tSW-R-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.23 | Max 0.49
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