Motif IL_70995.3 Version IL_70995.3 of this group appears in releases 3.18 to 3.25

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5		6	1-4	1-6	2-3	4-5	4-6
1	IL_3DIL_004	3DIL	0.4690	Major groove platform; stack outside cWW	A	RNA (174-MER)	G	54	G	55	*	C	38	A	39	U	40	C	41		cWW	cWW
2	IL_1NTA_003	1NTA	0.4117	Major groove platform; stack outside cWW	B+A	RNA (18-mer)	G	110	G	111	*	C	15	U	16	U	17	C	18		cWW	cWW		ncSH
3	IL_4IOA_022	4IOA	0.3763	Major groove platform; stack outside cWW (H)	X	LSU rRNA	A	944	G	945	*	U	857	G	858	U	859	U	860		cWW	cWW
4	IL_6CZR_139	6CZR	0.2483	Major groove platform; stack outside cWW	1a	SSU rRNA	G	638	A	639	*	U	735	G	736	A	737	C	738		cWW	cWW
5	IL_4V9F_061	4V9F	0.2660	Major groove platform; stack outside cWW	0	LSU rRNA	U	2034	C	2035	*	G	1744	G	1745	A	1746	A	1747	tHS	cWW	cWW
6	IL_4WF9_064	4WF9	0.2296	Major groove platform; stack outside cWW	X	LSU rRNA	U	2020	C	2021	*	G	1710	G	1711	A	1712	A	1713	tHS	cWW	cWW
7	IL_4V9F_008	4V9F	0.2217	Major groove platform; stack outside cWW	0	LSU rRNA	U	265	G	266	*	C	245	G	246	A	247	A	248	tHS	cWW	cWW
8	IL_4V88_428	4V88	0.2145	Major groove platform; stack outside cWW	A6	SSU rRNA	A	865	G	866	*	C	962	A	963	U	964	U	965		cWW	cWW
9	IL_4QK8_003	4QK8	0.0000		A	C-di-AMP riboswitch	G	39	G	40	*	C	89	G	90	A	91	C	92	tHS	cWW	cWW		ncSH
10	IL_4W90_004	4W90	0.1673	Major groove platform; stack outside cWW	C	cyclic di-AMP riboswitch	G	58	G	59	*	C	96	G	97	U	98	C	99	ntHS	cWW	cWW
11	IL_4QK9_003	4QK9	0.2067	Major groove platform; stack outside cWW	A	C-di-AMP riboswitch	G	43	G	44	*	C	93	G	94	U	95	C	96	ntHS	cWW	cWW
12	IL_4WF9_049	4WF9	0.3080	Major groove platform; stack outside cWW	X	LSU rRNA	A	1647	C	1648	*	G	1347	U	1348	U	1349	U	1350		cWW	cWW
13	IL_4Y4O_226	4Y4O	0.3205	Major groove platform; stack outside cWW (H)	2A	LSU rRNA	A	1603	C	1604	*	G	1310	G	1311	U	1312	U	1313		cWW	cWW	cSH
14	IL_5J7L_290	5J7L	0.5846	Major groove platform; stack outside cWW	DA	LSU rRNA	A	1603	C	1604	*	G	1310	G	1311	U	1312	U	1313		cWW	cWW
15	IL_4V9F_050	4V9F	0.6187	Major groove platform; stack outside cWW	0	LSU rRNA	A	1678	C	1679	*	G	1416	G	1417	U	1418	U	1419		cWW	cWW
16	IL_4IOA_048	4IOA	0.6254	Major groove platform; stack outside cWW (H)	X	LSU rRNA	A	1619	C	1620	*	G	1323	G	1324	U	1325	U	1326		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AC*GGUU	4
UC*GGAA	2
GG*CGUC	2
GG*CAUC	1
GG*CUUC	1
AG*UGUU	1
GA*UGAC	1
UG*CGAA	1
AG*CAUU	1
GG*CGAC	1
AC*GUUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
*GU	7
*GA	5
*AU	2
*UU	2

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform; stack outside cWW (12)
Major groove platform; stack outside cWW (H) (3)
(1)
Basepair signature: cWW-tHS-R-cWW
Heat map statistics: Min 0.10 | Avg 0.41 | Max 0.68

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