Motif IL_71530.3 Version IL_71530.3 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KXK_003 | 1KXK | 0.1813 | 2 | Multiple bulged bases | A | Group II catalytic intron | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
| 2 | IL_4V9F_095 | 4V9F | 0.0000 | 3 | Bulged stacked bases | 0 | LSU rRNA | U | 2732 | U | 2733 | * | A | 2746 | G | 2750 | cWW | cWW |
| 3 | IL_5J7L_349 | 5J7L | 0.0654 | 2 | Multiple bulged bases | DA | LSU rRNA | U | 2695 | U | 2696 | * | A | 2711 | G | 2714 | cWW | cWW |
| 4 | IL_4WF9_103 | 4WF9 | 0.0976 | 2 | Multiple bulged bases | X | LSU rRNA | U | 2722 | U | 2723 | * | A | 2738 | G | 2741 | cWW | cWW |
| 5 | IL_3IGI_013 | 3IGI | 0.2547 | 2 | Multiple bulged bases | A | Group II catalytic intron D1-D4-3 | U | 365 | A | 366 | * | U | 375 | G | 378 | cWW | cWW |
| 6 | IL_5TBW_119 | 5TBW | 0.2003 | 2 | Multiple bulged bases | 1 | LSU rRNA | C | 3063 | U | 3064 | * | A | 3077 | G | 3080 | cWW | cWW |
| 7 | IL_8C3A_128 | 8C3A | 0.2291 | 2 | Multiple bulged bases (H) | 1 | LSU rRNA | C | 3035 | U | 3036 | * | A | 3049 | G | 3052 | cWW | cWW |
| 8 | IL_4V9F_088 | 4V9F | 0.3806 | 2 | Multiple bulged bases | 0 | LSU rRNA | C | 2547 | C | 2548 | * | G | 2606 | G | 2609 | cWW | cWW |
| 9 | IL_8C3A_117 | 8C3A | 0.4478 | 2 | Multiple bulged bases (H) | 1 | LSU rRNA | C | 2853 | U | 2854 | * | A | 2912 | G | 2915 | cWW | cWW |
| 10 | IL_5TBW_109 | 5TBW | 0.4334 | 2 | Multiple bulged bases | 1 | LSU rRNA | C | 2881 | U | 2882 | * | A | 2940 | G | 2943 | cWW | cWW |
| 11 | IL_7A0S_090 | 7A0S | 0.5955 | 2 | Multiple bulged bases | X | LSU rRNA | C | 2491 | G | 2492 | * | C | 2550 | G | 2553 | cWW | cWW |
| 12 | IL_8VTW_097 | 8VTW | 0.5877 | 2 | Multiple bulged bases (H) | 1A | LSU rRNA | C | 2512 | G | 2513 | * | C | 2571 | G | 2574 | cWW | cWW |
| 13 | IL_4WF9_096 | 4WF9 | 0.6191 | 2 | Multiple bulged bases (H) | X | LSU rRNA | C | 2539 | A | 2540 | * | U | 2598 | G | 2601 | cWW | cWW |
| 14 | IL_5J7L_341 | 5J7L | 0.6198 | 2 | DA | LSU rRNA | C | 2512 | A | 2513 | * | U | 2571 | G | 2574 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CU*AACG | 3 |
| CG*CACG | 2 |
| CA*UACG | 2 |
| UG*CACG | 1 |
| UU*ACGUG | 1 |
| UU*ACUG | 1 |
| UU*AUAG | 1 |
| UA*UACG | 1 |
| CU*AUUG | 1 |
| CC*GUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AC | 9 |
| *CGU | 1 |
| *CU | 1 |
| *UA | 1 |
| *UU | 1 |
| *UC | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (8)
- Multiple bulged bases (H) (4)
- Bulged stacked bases (1)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.35 | Max 0.71
Coloring options: