RNA 3D Hub //

Motif IL_71530.3 Version IL_71530.3 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_1KXK_0031KXK0.18132Multiple bulged basesAai5g group II Self-splicing intronU28G29*C42G45cWWcWW
2 IL_4V9F_0954V9F0.00003Bulged stacked bases0 LSU rRNAU2732U2733*A2746G2750cWWcWW
3 IL_5J7L_3495J7L0.06542Multiple bulged basesDA LSU rRNAU2695U2696*A2711G2714cWWcWW
4 IL_4WF9_1034WF90.09762Multiple bulged basesX LSU rRNAU2722U2723*A2738G2741cWWcWW
5 IL_3IGI_0133IGI0.25472Multiple bulged basesAGroup IIC intronU365A366*U375G378cWWcWW
6 IL_5TBW_1195TBW0.20032Multiple bulged bases1 LSU rRNAC3063U3064*A3077G3080cWWcWW
7 IL_8C3A_1288C3A0.22912Multiple bulged bases (H)1 LSU rRNAC3035U3036*A3049G3052cWWcWW
8 IL_4V9F_0884V9F0.38062Multiple bulged bases0 LSU rRNAC2547C2548*G2606G2609cWWcWW
9 IL_8C3A_1178C3A0.44782Multiple bulged bases (H)1 LSU rRNAC2853U2854*A2912G2915cWWcWW
10 IL_5TBW_1095TBW0.43342Multiple bulged bases1 LSU rRNAC2881U2882*A2940G2943cWWcWW
11 IL_7A0S_0907A0S0.59552Multiple bulged basesX LSU rRNAC2491G2492*C2550G2553cWWcWW
12 IL_8VTW_0978VTW0.58772Multiple bulged bases (H)1A LSU rRNAC2512G2513*C2571G2574cWWcWW
13 IL_4WF9_0964WF90.61912X LSU rRNAC2539A2540*U2598G2601cWWcWW
14 IL_5J7L_3415J7L0.61982DA LSU rRNAC2512A2513*U2571G2574cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CU*AACG3
CG*CACG2
CA*UACG2
UG*CACG1
UU*ACGUG1
UU*ACUG1
UU*AUAG1
UA*UACG1
CU*AUUG1
CC*GUCG1
Non-Watson-Crick part of the motif
SequenceCounts
*AC9
*CGU1
*CU1
*UA1
*UU1
*UC1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Multiple bulged bases (8)
  • Multiple bulged bases (H) (3)
  • (2)
  • Bulged stacked bases (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.07 | Avg 0.35 | Max 0.71
    Help

    Coloring options:

    IL_1KXK_003:IL_1KXK_003 = 0IL_1KXK_003:IL_4V9F_095 = 0.1813IL_1KXK_003:IL_5J7L_349 = 0.1991IL_1KXK_003:IL_4WF9_103 = 0.2291IL_1KXK_003:IL_3IGI_013 = 0.3477IL_1KXK_003:IL_5TBW_119 = 0.3509IL_1KXK_003:IL_8C3A_128 = 0.3762IL_1KXK_003:IL_4V9F_088 = 0.5288IL_1KXK_003:IL_8C3A_117 = 0.6064IL_1KXK_003:IL_5TBW_109 = 0.5888IL_1KXK_003:IL_7A0S_090 = 0.7019IL_1KXK_003:IL_8VTW_097 = 0.6931IL_1KXK_003:IL_4WF9_096 = 0.7087IL_1KXK_003:IL_5J7L_341 = 0.6961IL_4V9F_095:IL_1KXK_003 = 0.1813IL_4V9F_095:IL_4V9F_095 = 0IL_4V9F_095:IL_5J7L_349 = 0.0654IL_4V9F_095:IL_4WF9_103 = 0.0976IL_4V9F_095:IL_3IGI_013 = 0.2547IL_4V9F_095:IL_5TBW_119 = 0.2003IL_4V9F_095:IL_8C3A_128 = 0.2291IL_4V9F_095:IL_4V9F_088 = 0.3806IL_4V9F_095:IL_8C3A_117 = 0.4478IL_4V9F_095:IL_5TBW_109 = 0.4334IL_4V9F_095:IL_7A0S_090 = 0.5955IL_4V9F_095:IL_8VTW_097 = 0.5877IL_4V9F_095:IL_4WF9_096 = 0.6191IL_4V9F_095:IL_5J7L_341 = 0.6198IL_5J7L_349:IL_1KXK_003 = 0.1991IL_5J7L_349:IL_4V9F_095 = 0.0654IL_5J7L_349:IL_5J7L_349 = 0IL_5J7L_349:IL_4WF9_103 = 0.0776IL_5J7L_349:IL_3IGI_013 = 0.2358IL_5J7L_349:IL_5TBW_119 = 0.2036IL_5J7L_349:IL_8C3A_128 = 0.2296IL_5J7L_349:IL_4V9F_088 = 0.3632IL_5J7L_349:IL_8C3A_117 = 0.4295IL_5J7L_349:IL_5TBW_109 = 0.413IL_5J7L_349:IL_7A0S_090 = 0.5773IL_5J7L_349:IL_8VTW_097 = 0.5719IL_5J7L_349:IL_4WF9_096 = 0.6036IL_5J7L_349:IL_5J7L_341 = 0.6044IL_4WF9_103:IL_1KXK_003 = 0.2291IL_4WF9_103:IL_4V9F_095 = 0.0976IL_4WF9_103:IL_5J7L_349 = 0.0776IL_4WF9_103:IL_4WF9_103 = 0IL_4WF9_103:IL_3IGI_013 = 0.2758IL_4WF9_103:IL_5TBW_119 = 0.214IL_4WF9_103:IL_8C3A_128 = 0.2421IL_4WF9_103:IL_4V9F_088 = 0.3762IL_4WF9_103:IL_8C3A_117 = 0.433IL_4WF9_103:IL_5TBW_109 = 0.4217IL_4WF9_103:IL_7A0S_090 = 0.593IL_4WF9_103:IL_8VTW_097 = 0.5878IL_4WF9_103:IL_4WF9_096 = 0.6258IL_4WF9_103:IL_5J7L_341 = 0.6295IL_3IGI_013:IL_1KXK_003 = 0.3477IL_3IGI_013:IL_4V9F_095 = 0.2547IL_3IGI_013:IL_5J7L_349 = 0.2358IL_3IGI_013:IL_4WF9_103 = 0.2758IL_3IGI_013:IL_3IGI_013 = 0IL_3IGI_013:IL_5TBW_119 = 0.2381IL_3IGI_013:IL_8C3A_128 = 0.2242IL_3IGI_013:IL_4V9F_088 = 0.2767IL_3IGI_013:IL_8C3A_117 = 0.3803IL_3IGI_013:IL_5TBW_109 = 0.365IL_3IGI_013:IL_7A0S_090 = 0.3952IL_3IGI_013:IL_8VTW_097 = 0.3711IL_3IGI_013:IL_4WF9_096 = 0.3977IL_3IGI_013:IL_5J7L_341 = 0.3828IL_5TBW_119:IL_1KXK_003 = 0.3509IL_5TBW_119:IL_4V9F_095 = 0.2003IL_5TBW_119:IL_5J7L_349 = 0.2036IL_5TBW_119:IL_4WF9_103 = 0.214IL_5TBW_119:IL_3IGI_013 = 0.2381IL_5TBW_119:IL_5TBW_119 = 0IL_5TBW_119:IL_8C3A_128 = 0.0784IL_5TBW_119:IL_4V9F_088 = 0.2182IL_5TBW_119:IL_8C3A_117 = 0.3001IL_5TBW_119:IL_5TBW_109 = 0.2923IL_5TBW_119:IL_7A0S_090 = 0.4761IL_5TBW_119:IL_8VTW_097 = 0.4671IL_5TBW_119:IL_4WF9_096 = 0.5079IL_5TBW_119:IL_5J7L_341 = 0.5281IL_8C3A_128:IL_1KXK_003 = 0.3762IL_8C3A_128:IL_4V9F_095 = 0.2291IL_8C3A_128:IL_5J7L_349 = 0.2296IL_8C3A_128:IL_4WF9_103 = 0.2421IL_8C3A_128:IL_3IGI_013 = 0.2242IL_8C3A_128:IL_5TBW_119 = 0.0784IL_8C3A_128:IL_8C3A_128 = 0IL_8C3A_128:IL_4V9F_088 = 0.1915IL_8C3A_128:IL_8C3A_117 = 0.2761IL_8C3A_128:IL_5TBW_109 = 0.2828IL_8C3A_128:IL_7A0S_090 = 0.4566IL_8C3A_128:IL_8VTW_097 = 0.445IL_8C3A_128:IL_4WF9_096 = 0.4905IL_8C3A_128:IL_5J7L_341 = 0.5058IL_4V9F_088:IL_1KXK_003 = 0.5288IL_4V9F_088:IL_4V9F_095 = 0.3806IL_4V9F_088:IL_5J7L_349 = 0.3632IL_4V9F_088:IL_4WF9_103 = 0.3762IL_4V9F_088:IL_3IGI_013 = 0.2767IL_4V9F_088:IL_5TBW_119 = 0.2182IL_4V9F_088:IL_8C3A_128 = 0.1915IL_4V9F_088:IL_4V9F_088 = 0IL_4V9F_088:IL_8C3A_117 = 0.1413IL_4V9F_088:IL_5TBW_109 = 0.1564IL_4V9F_088:IL_7A0S_090 = 0.3195IL_4V9F_088:IL_8VTW_097 = 0.331IL_4V9F_088:IL_4WF9_096 = 0.3866IL_4V9F_088:IL_5J7L_341 = 0.4246IL_8C3A_117:IL_1KXK_003 = 0.6064IL_8C3A_117:IL_4V9F_095 = 0.4478IL_8C3A_117:IL_5J7L_349 = 0.4295IL_8C3A_117:IL_4WF9_103 = 0.433IL_8C3A_117:IL_3IGI_013 = 0.3803IL_8C3A_117:IL_5TBW_119 = 0.3001IL_8C3A_117:IL_8C3A_128 = 0.2761IL_8C3A_117:IL_4V9F_088 = 0.1413IL_8C3A_117:IL_8C3A_117 = 0IL_8C3A_117:IL_5TBW_109 = 0.0824IL_8C3A_117:IL_7A0S_090 = 0.3766IL_8C3A_117:IL_8VTW_097 = 0.41IL_8C3A_117:IL_4WF9_096 = 0.4699IL_8C3A_117:IL_5J7L_341 = 0.5145IL_5TBW_109:IL_1KXK_003 = 0.5888IL_5TBW_109:IL_4V9F_095 = 0.4334IL_5TBW_109:IL_5J7L_349 = 0.413IL_5TBW_109:IL_4WF9_103 = 0.4217IL_5TBW_109:IL_3IGI_013 = 0.365IL_5TBW_109:IL_5TBW_119 = 0.2923IL_5TBW_109:IL_8C3A_128 = 0.2828IL_5TBW_109:IL_4V9F_088 = 0.1564IL_5TBW_109:IL_8C3A_117 = 0.0824IL_5TBW_109:IL_5TBW_109 = 0IL_5TBW_109:IL_7A0S_090 = 0.3765IL_5TBW_109:IL_8VTW_097 = 0.4127IL_5TBW_109:IL_4WF9_096 = 0.4665IL_5TBW_109:IL_5J7L_341 = 0.5101IL_7A0S_090:IL_1KXK_003 = 0.7019IL_7A0S_090:IL_4V9F_095 = 0.5955IL_7A0S_090:IL_5J7L_349 = 0.5773IL_7A0S_090:IL_4WF9_103 = 0.593IL_7A0S_090:IL_3IGI_013 = 0.3952IL_7A0S_090:IL_5TBW_119 = 0.4761IL_7A0S_090:IL_8C3A_128 = 0.4566IL_7A0S_090:IL_4V9F_088 = 0.3195IL_7A0S_090:IL_8C3A_117 = 0.3766IL_7A0S_090:IL_5TBW_109 = 0.3765IL_7A0S_090:IL_7A0S_090 = 0IL_7A0S_090:IL_8VTW_097 = 0.1247IL_7A0S_090:IL_4WF9_096 = 0.1639IL_7A0S_090:IL_5J7L_341 = 0.2161IL_8VTW_097:IL_1KXK_003 = 0.6931IL_8VTW_097:IL_4V9F_095 = 0.5877IL_8VTW_097:IL_5J7L_349 = 0.5719IL_8VTW_097:IL_4WF9_103 = 0.5878IL_8VTW_097:IL_3IGI_013 = 0.3711IL_8VTW_097:IL_5TBW_119 = 0.4671IL_8VTW_097:IL_8C3A_128 = 0.445IL_8VTW_097:IL_4V9F_088 = 0.331IL_8VTW_097:IL_8C3A_117 = 0.41IL_8VTW_097:IL_5TBW_109 = 0.4127IL_8VTW_097:IL_7A0S_090 = 0.1247IL_8VTW_097:IL_8VTW_097 = 0IL_8VTW_097:IL_4WF9_096 = 0.1012IL_8VTW_097:IL_5J7L_341 = 0.1423IL_4WF9_096:IL_1KXK_003 = 0.7087IL_4WF9_096:IL_4V9F_095 = 0.6191IL_4WF9_096:IL_5J7L_349 = 0.6036IL_4WF9_096:IL_4WF9_103 = 0.6258IL_4WF9_096:IL_3IGI_013 = 0.3977IL_4WF9_096:IL_5TBW_119 = 0.5079IL_4WF9_096:IL_8C3A_128 = 0.4905IL_4WF9_096:IL_4V9F_088 = 0.3866IL_4WF9_096:IL_8C3A_117 = 0.4699IL_4WF9_096:IL_5TBW_109 = 0.4665IL_4WF9_096:IL_7A0S_090 = 0.1639IL_4WF9_096:IL_8VTW_097 = 0.1012IL_4WF9_096:IL_4WF9_096 = 0IL_4WF9_096:IL_5J7L_341 = 0.1075IL_5J7L_341:IL_1KXK_003 = 0.6961IL_5J7L_341:IL_4V9F_095 = 0.6198IL_5J7L_341:IL_5J7L_349 = 0.6044IL_5J7L_341:IL_4WF9_103 = 0.6295IL_5J7L_341:IL_3IGI_013 = 0.3828IL_5J7L_341:IL_5TBW_119 = 0.5281IL_5J7L_341:IL_8C3A_128 = 0.5058IL_5J7L_341:IL_4V9F_088 = 0.4246IL_5J7L_341:IL_8C3A_117 = 0.5145IL_5J7L_341:IL_5TBW_109 = 0.5101IL_5J7L_341:IL_7A0S_090 = 0.2161IL_5J7L_341:IL_8VTW_097 = 0.1423IL_5J7L_341:IL_4WF9_096 = 0.1075IL_5J7L_341:IL_5J7L_341 = 0IL_1KXK_003IL_4V9F_095IL_5J7L_349IL_4WF9_103IL_3IGI_013IL_5TBW_119IL_8C3A_128IL_4V9F_088IL_8C3A_117IL_5TBW_109IL_7A0S_090IL_8VTW_097IL_4WF9_096IL_5J7L_341Discrepancy0.000.200.400.60
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