Motif IL_71960.3 Version IL_71960.3 of this group appears in releases 3.24 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_098 | 4WF9 | 0.5259 | 0 | Single bulged A | X | LSU rRNA | C | 2628 | A | 2629 | G | 2630 | * | C | 2618 | G | 2619 | cWW | cWW | |
| 2 | IL_6N2V_002 | 6N2V | 0.0000 | 6 | Minor groove platform | A | X. oryzae Mn riboswitch optimized construct | A | 45 | A | 46 | C | 53 | * | G | 64 | U | 65 | cSH | cWW | cWW |
| 3 | IL_6CB3_004 | 6CB3 | 0.1944 | 6 | Minor groove platform | B | RNA (99-MER) | G | 38 | U | 39 | G | 46 | * | C | 59 | C | 60 | cSH | cWW | cWW |
| 4 | IL_4IOA_094 | 4IOA | 0.5293 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2580 | A | 2581 | G | 2582 | * | C | 2570 | G | 2571 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CG | 2 |
| AACAUACUC*GU | 1 |
| GUCAAUUCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 2 |
| ACAUACU* | 1 |
| UCAAUUC* | 1 |
Release history
| Release | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (2)
- Single bulged A (H) (1)
- Single bulged A (1)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.19 | Avg 0.38 | Max 0.65
Coloring options: