IL_6N2V_002

3D structure

PDB id

6N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manganese riboswitch from Xanthmonas oryzae bound to Mn(II)

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

AACAUACUC*GU

Length

11 nucleotides

Bulged bases

6N2V|1|A|U|49, 6N2V|1|A|A|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33711.1

Basepair signature

cWW-cSH-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

6N2V|1|A|A|45
6N2V|1|A|A|46
6N2V|1|A|C|47
6N2V|1|A|A|48
6N2V|1|A|U|49
6N2V|1|A|A|50
6N2V|1|A|C|51
6N2V|1|A|U|52
6N2V|1|A|C|53
*
6N2V|1|A|G|64
6N2V|1|A|U|65

Current chains

Chain A

X. oryzae Mn riboswitch optimized construct

Nearby chains

Chain B

X. oryzae Mn riboswitch optimized construct