Motif IL_71960.4 Version IL_71960.4 of this group appears in releases 3.48 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_098 | 4WF9 | 0.5259 | 0 | Single bulged A | X | LSU rRNA | C | 2628 | A | 2629 | G | 2630 | * | C | 2618 | G | 2619 | cWW | cWW | |
| 2 | IL_6N2V_002 | 6N2V | 0.0000 | 6 | Minor groove platform | A | X. oryzae Mn riboswitch optimized construct | A | 45 | A | 46 | C | 53 | * | G | 64 | U | 65 | cSH | cWW | cWW |
| 3 | IL_6CB3_004 | 6CB3 | 0.1944 | 6 | Minor groove platform | B | RNA (99-MER) | G | 38 | U | 39 | G | 46 | * | C | 59 | C | 60 | cSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CG | 1 |
| AACAUACUC*GU | 1 |
| GUCAAUUCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 1 |
| ACAUACU* | 1 |
| UCAAUUC* | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (2)
- Single bulged A (1)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.19 | Avg 0.29 | Max 0.58
Coloring options: