Motif IL_72838.1 Version IL_72838.1 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | break | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 1-40 | 2-39 | 3-39 | 6-36 | 8-34 | 9-13 | 12-31 | 12-32 | 14-29 | 15-37 | 16-17 | 17-28 | 18-27 | 19-27 | 31-32 | ||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_472 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | G | 1249 | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | C | 1255 | G | 1256 | C | 1257 | U | 1258 | A | 1259 | A | 1260 | G | 1261 | G | 1262 | A | 1263 | G | 1264 | U | 1265 | G | 1266 | U | 1267 | G | 1268 | U | 1269 | A | 1270 | A | 1271 | C | 1272 | A | 1273 | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | C | 1279 | * | G | 1230 | A | 1231 | C | 1232 | G | 1233 | G | 1234 | U | 1235 | G | 1237 | C | 1238 | C | 1239 | cWW | ncWW | ncWS | ncWW | ncWW | tWW | ncSs | ntSs | cWW | cHW | ncSH | cWw | ncWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAUCCGCUAAGGAGUGUGUAACAACUCAC*GACGGUGGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUCCGCUAAGGAGUGUGUAACAACUCA*ACGGUGGC | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-L-R-L-R-L-cHW-L-R-L-R-L-R-L-R-tWW-R-L-R-L-R-L-cWW-cWW-R-R-L-R-R-L-R-L-R-L-R
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: