Motif IL_73312.1 Version IL_73312.1 of this group appears in releases 3.46 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KUQ_003 | 1KUQ | 0.7529 | 1 | Tandem non-canonical cWW pairs | B | 16S RIBOSOMAL RNA FRAGMENT | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | ncWW | cwW | cWW |
| 2 | IL_255D_001 | 255D | 0.0000 | 0 | Tandem non-canonical cWW pairs | A | RNA (12-mer) | U | 5 | U | 6 | C | 7 | G | 8 | * | U | 5||||2_656 | U | 6||||2_656 | C | 7||||2_656 | G | 8||||2_656 | cWW | cWW | cWW | cWW |
| 3 | IL_205D_001 | 205D | 0.5308 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (12-mer) | U | 5 | U | 6 | U | 7 | G | 8 | * | U | 17 | U | 18 | U | 19 | G | 20 | cWW | cwW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAG*UGGU | 1 |
| UUCG*UUCG | 1 |
| UUUG*UUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGA*GG | 1 |
| UC*UC | 1 |
| UU*UU | 1 |
- Annotations
-
- Tandem non-canonical cWW pairs (3)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.53 | Avg 0.47 | Max 0.81
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