Motif IL_73886.1 Version IL_73886.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7JJU_003 | 7JJU | 0.6470 | 3 | B | PLRV_xrRNA | G | 36 | A | 38 | * | U | 6 | C | 9 | cWW | cWW | |
| 2 | IL_7JJU_001 | 7JJU | 0.6534 | 3 | A | PLRV_xrRNA | G | 36 | A | 38 | * | U | 6 | C | 9 | cWW | cWW | |
| 3 | IL_7VTI_003 | 7VTI | 0.3794 | 2 | Major groove intercalation | B | crRNA | A | 9 | G | 10 | * | U | 27 | U | 30 | cWW | cWW |
| 4 | IL_5XTM_004 | 5XTM | 0.2409 | 1 | Major groove intercalation | D | RNA (47-MER) | A | 44 | G | 45 | * | U | 3 | U | 5 | cWW | cWW |
| 5 | IL_5DCV_005 | 5DCV | 0.1299 | 1 | Major groove intercalation | D | RNA (47-MER) | A | 48 | G | 49 | * | U | 3 | U | 5 | cWW | cWW |
| 6 | IL_1U6B_010 | 1U6B | 0.0000 | 1 | Major groove intercalation | B | 197-MER | A | 150 | G | 151 | * | U | 160 | U | 162 | cWW | cWW |
| 7 | IL_5VCI_004 | 5VCI | 0.1684 | 1 | Major groove intercalation | A+B | RNA (22-mer) + RNA (12-mer) | A | 11 | G | 12 | * | U | 2 | U | 4 | cWW | cWW |
| 8 | IL_4PCJ_004 | 4PCJ | 0.1855 | 1 | Major groove intercalation | A | trCUG-3('5) | A | 11 | G | 12 | * | U | 25 | U | 27 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAU | 5 |
| GAA*UAGC | 2 |
| AG*UGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 5 |
| A*AG | 2 |
| *GA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove intercalation (6)
- (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.33 | Max 0.65
Coloring options: