Motif IL_74386.1 Version IL_74386.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_090 | 4V9F | 0.2028 | 0 | Single bulged A | 0 | LSU rRNA | C | 2636 | A | 2637 | G | 2638 | * | C | 2626 | G | 2627 | cWW | cWW |
| 2 | IL_8VTW_100 | 8VTW | 0.0000 | 0 | 1A | LSU rRNA | C | 2601 | A | 2602 | G | 2603 | * | C | 2591 | G | 2592 | cWW | cWW | |
| 3 | IL_6XJQ_007 | 6XJQ | 0.8147 | 1 | A | Self-alkylating ribozyme (58-MER) | C | 23 | U | 24 | G | 26 | * | C | 35 | G | 36 | cWW | cWW | |
| 4 | IL_5J7L_268 | 5J7L | 0.8475 | 1 | Stack outside cWW | DA | LSU rRNA | G | 930 | U | 931 | A | 933 | * | U | 847||A | C | 848 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CG | 2 |
| CUUG*CG | 1 |
| UC*GUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 2 |
| UU* | 1 |
| *UU | 1 |
- Annotations
-
- (2)
- Single bulged A (1)
- Stack outside cWW (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.20 | Avg 0.50 | Max 0.95
Coloring options: