Motif IL_74602.1 Version IL_74602.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7TZS_001 | 7TZS | 0.6646 | 1 | X | TPP riboswitch (THI element) | A | 45 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | cWW | cWW | cWW | |
| 2 | IL_8F4O_005 | 8F4O | 0.5376 | 1 | B | TPP riboswitch (THI element) | A | 45 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | cWW | cWW | cWW | |
| 3 | IL_7A0S_052 | 7A0S | 0.5829 | 1 | X | LSU rRNA | G | 1573 | A | 1574 | G | 1576 | * | U | 1447 | A | 1448 | C | 1449 | cWW | ncWw | cWW | |
| 4 | IL_4PDQ_004 | 4PDQ | 0.1927 | 0 | A+B | RNA (23-mer) | G | 19 | U | 20 | C | 21 | * | G | 28 | U | 29 | C | 30 | cWW | ncwW | cWW | |
| 5 | IL_6IA2_001 | 6IA2 | 0.1025 | 0 | B+A | RNA (19-mer) | C | 16 | C | 17 | C | 18 | * | G | 2 | A | 3 | G | 4 | cWW | cWW | cWW | |
| 6 | IL_1KFO_002 | 1KFO | 0.0000 | 0 | CA cWW | A | RNA (19-mer) | C | 6 | C | 7 | U | 8 | * | G | 11||||8_555 | A | 12||||8_555 | G | 13||||8_555 | cWW | cWW | cWW |
| 7 | IL_1KFO_003 | 1KFO | 0.0003 | 0 | CA cWW | A | RNA (19-mer) | C | 6||||8_555 | C | 7||||8_555 | U | 8||||8_555 | * | G | 11 | A | 12 | G | 13 | cWW | cWW | cWW |
| 8 | IL_4WF9_042 | 4WF9 | 0.1407 | 0 | X | LSU rRNA | G | 1081 | C | 1082 | G | 1083 | * | C | 1160 | A | 1161 | C | 1162 | cWW | ncWW | cWW | |
| 9 | IL_5Y7M_007 | 5Y7M | 0.1470 | 0 | D | RNA (52-MER) | A | 11 | C | 12 | C | 13 | * | G | 37 | A | 38 | U | 39 | cWW | cWW | cWW | |
| 10 | IL_6M6R_002 | 6M6R | 0.1430 | 0 | B | RNA (8-mer) | G | 5 | C | 6 | C | 7 | * | G | 2||||7_555 | C | 3||||7_555 | C | 4||||7_555 | cWW | cWW | ||
| 11 | IL_6M6R_001 | 6M6R | 0.1430 | 0 | B | RNA (8-mer) | G | 5||||7_555 | C | 6||||7_555 | C | 7||||7_555 | * | G | 2 | C | 3 | C | 4 | cWW | cWW | ||
| 12 | IL_4V9F_105 | 4V9F | 0.1573 | 0 | 9 | 5S rRNA | C | 107 | C | 108 | G | 109 | * | C | 72 | A | 73 | G | 74 | cWW | cWW | cWW | |
| 13 | IL_4X4N_005 | 4X4N | 0.1959 | 0 | D | G70A tRNA minihelix | G | 2 | C | 3 | C | 4 | * | G | 28 | A | 29 | U | 30 | ncWWa | ncWW | cWW | |
| 14 | IL_5TBW_079 | 5TBW | 0.1871 | 0 | 1 | LSU rRNA | G | 1940 | C | 1941 | U | 1942 | * | A | 2106 | A | 2107 | C | 2108 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAC*GGU | 2 |
| CCU*GAG | 2 |
| GCC*GCC | 2 |
| GACG*UAC | 1 |
| GUC*GUC | 1 |
| CCC*GAG | 1 |
| GCG*CAC | 1 |
| ACC*GAU | 1 |
| CCG*CAG | 1 |
| GCC*GAU | 1 |
| GCU*AAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*A | 8 |
| UA*G | 2 |
| C*C | 2 |
| AC*A | 1 |
| U*U | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- CA cWW (2)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.30 | Max 0.72
Coloring options: