#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9break 10 11 12 13 14 15 16 17 181-182-173-164-145-138-119-10
1 IL_2P7E_0012P7E0.06852C+DRibozyme strand II + Ribozyme strand IIIG19A20G21A22A23A24C25A26C27*G35G36A38A40U41U42A43C44C45cWWcWWatSHtHWtHWcWWcWW
2 IL_1M5O_0021M5O0.00002BRNA HAIRPIN RIBOZYMEG19A20G21A22A23A24C25A26C27*G54G55A57A59U60U61A62C63C64cWWcWWatSHtHWtHWcWWcWW
3 IL_1M5O_0051M5O0.05292ERNA HAIRPIN RIBOZYMEG19A20G21A22A23A24C25A26C27*G54G55A57A59U60U61A62C63C64cWWcWWatSHtHWtHWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGAAACAC*GGUAUAUUACC2
GAGAAACAC*GGUACAUUACC1
Non-Watson-Crick part of the motif
SequenceCounts
AGAAACA*GUAUAUUAC2
AGAAACA*GUACAUUAC1

Release history

Release0.10.20.30.40.5
Date2011-12-082011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_76095.1Only in the child motif
IL_76095.2
Compare
IL_1M5O_005, IL_1M5O_002IL_2P7E_001IL_2P7D_001
Annotations
  • (3)
  • Basepair signature
    Heat map statistics
    Min 0.05 | Avg 0.04 | Max 0.08
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