Motif IL_76223.1 Version IL_76223.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_086 | 4V9F | 0.1982 | 0 | Major groove platform | 0 | LSU rRNA | U | 2615 | G | 2616 | G | 2617 | * | C | 2542 | G | 2543 | cWW | nchH | cWW |
| 2 | IL_7RQB_096 | 7RQB | 0.1860 | 0 | Major groove platform | 1A | LSU rRNA | U | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW |
| 3 | IL_4WF9_094 | 4WF9 | 0.2092 | 0 | Major groove platform | X | LSU rRNA | U | 2607 | G | 2608 | G | 2609 | * | C | 2534 | G | 2535 | cWW | chH | cWW |
| 4 | IL_5TBW_107 | 5TBW | 0.2096 | 0 | Major groove platform | 1 | LSU rRNA | U | 2949 | G | 2950 | G | 2951 | * | C | 2876 | G | 2877 | cWW | cWW | |
| 5 | IL_7A0S_088 | 7A0S | 0.1809 | 0 | Major groove platform | X | LSU rRNA | U | 2559 | G | 2560 | G | 2561 | * | C | 2486 | G | 2487 | cWW | chH | cWW |
| 6 | IL_4V9F_083 | 4V9F | 0.0000 | 0 | Major groove platform | 0 | LSU rRNA | U | 2492 | C | 2493 | G | 2494 | * | U | 2528 | G | 2529 | cWW | cHH | cWW |
| 7 | IL_5TBW_104 | 5TBW | 0.1261 | 0 | Major groove platform | 1 | LSU rRNA | U | 2826 | U | 2827 | G | 2828 | * | U | 2862 | G | 2863 | cWW | cWW | |
| 8 | IL_3WBM_004 | 3WBM | 0.7844 | 0 | Other IL | Y+X | RNA (25-MER) | G | 2 | U | 3 | A | 4 | * | U | 23 | C | 24 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*CG | 5 |
| UCG*UG | 1 |
| UUG*UG | 1 |
| GUA*UC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 5 |
| U* | 2 |
| C* | 1 |
- Annotations
-
- Major groove platform (7)
- Other IL (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.27 | Max 0.84
Coloring options: