Motif IL_76223.4 Version IL_76223.4 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_115 | 8C3A | 0.1120 | 0 | Major groove platform (H) | 1 | LSU rRNA | U | 2921 | G | 2922 | G | 2923 | * | C | 2848 | G | 2849 | cWW | cWW | |
2 | IL_4V9F_086 | 4V9F | 0.1015 | 0 | Major groove platform | 0 | LSU rRNA | U | 2615 | G | 2616 | G | 2617 | * | C | 2542 | G | 2543 | cWW | nchH | cWW |
3 | IL_5TBW_107 | 5TBW | 0.0000 | 0 | Major groove platform | 1 | LSU rRNA | U | 2949 | G | 2950 | G | 2951 | * | C | 2876 | G | 2877 | cWW | cWW | |
4 | IL_4WF9_094 | 4WF9 | 0.0920 | 0 | Major groove platform | X | LSU rRNA | U | 2607 | G | 2608 | G | 2609 | * | C | 2534 | G | 2535 | cWW | chH | cWW |
5 | IL_8VTW_095 | 8VTW | 0.1157 | 0 | Major groove platform (H) | 1A | LSU rRNA | U | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW |
6 | IL_7A0S_088 | 7A0S | 0.1543 | 0 | Major groove platform | X | LSU rRNA | U | 2559 | G | 2560 | G | 2561 | * | C | 2486 | G | 2487 | cWW | chH | cWW |
7 | IL_8C3A_112 | 8C3A | 0.2168 | 0 | Major groove platform (H) | 1 | LSU rRNA | U | 2798 | U | 2799 | G | 2800 | * | U | 2834 | G | 2835 | cWW | cWW | |
8 | IL_5TBW_104 | 5TBW | 0.2045 | 0 | Major groove platform | 1 | LSU rRNA | U | 2826 | U | 2827 | G | 2828 | * | U | 2862 | G | 2863 | cWW | cWW | |
9 | IL_4V9F_083 | 4V9F | 0.2096 | 0 | Major groove platform | 0 | LSU rRNA | U | 2492 | C | 2493 | G | 2494 | * | U | 2528 | G | 2529 | cWW | cHH | cWW |
10 | IL_5J7L_394 | 5J7L | 0.3811 | 0 | DA | LSU rRNA | PSU | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGG*CG | 6 |
UUG*UG | 2 |
UCG*UG | 1 |
(PSU)GG*CG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G* | 7 |
U* | 2 |
C* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (6)
- Major groove platform (H) (3)
- (1)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.22 | Max 0.74
Coloring options: