#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-33-4
1 IL_8C3A_1158C3A0.11200Major groove platform (H)1 LSU rRNAU2921G2922G2923*C2848G2849cWWcWW
2 IL_4V9F_0864V9F0.10150Major groove platform0 LSU rRNAU2615G2616G2617*C2542G2543cWWnchHcWW
3 IL_5TBW_1075TBW0.00000Major groove platform1 LSU rRNAU2949G2950G2951*C2876G2877cWWcWW
4 IL_4WF9_0944WF90.09200Major groove platformX LSU rRNAU2607G2608G2609*C2534G2535cWWchHcWW
5 IL_8VTW_0958VTW0.11570Major groove platform (H)1A LSU rRNAU2580G2581G2582*C2507G2508cWWchHcWW
6 IL_7A0S_0887A0S0.15430Major groove platformX LSU rRNAU2559G2560G2561*C2486G2487cWWchHcWW
7 IL_8C3A_1128C3A0.21680Major groove platform (H)1 LSU rRNAU2798U2799G2800*U2834G2835cWWcWW
8 IL_5TBW_1045TBW0.20450Major groove platform1 LSU rRNAU2826U2827G2828*U2862G2863cWWcWW
9 IL_4V9F_0834V9F0.20960Major groove platform0 LSU rRNAU2492C2493G2494*U2528G2529cWWcHHcWW
10 IL_5J7L_3945J7L0.38110DA LSU rRNAPSU2580G2581G2582*C2507G2508cWWchHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGG*CG6
UUG*UG2
UCG*UG1
(PSU)GG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
G*7
U*2
C*1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (6)
  • Major groove platform (H) (3)
  • (1)
  • Basepair signature
    cWW-cHH-cWW
    Heat map statistics
    Min 0.09 | Avg 0.22 | Max 0.74
    Help

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