RNA 3D Hub //

Motif IL_77691.1 Version IL_77691.1 of this group appears in releases 3.80 to 3.83

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 91-92-83-75-6
1 IL_4V88_3904V880.44452A6 SSU rRNAU82G83A84A85A86*U64A65A67G69cWWtSHcWW
2 IL_8C3A_3988C3A0.45272CM SSU rRNAU82G83A84A85A86*U64A65A67G69cWWtSHcWW
3 IL_2R8S_0022R8S0.27980UAA/GAN variationRP4-P6 RNA RIBOZYME DOMAING112A113A114A115G116*U205A206A207C208cWWtSHtHScWW
4 IL_3FS0_0013FS00.25620UAA/GAN relatedB+ARNA (11-mer)C-1G1G2A3A4*U46G47A48G49cWWtSHntHhcWW
5 IL_5J7L_3175J7L0.14380UAA/GAN variationDA LSU rRNAC1874G1875A1876A1877G1878*U1864U1865A1866G1867cWWtSHcWW
6 IL_4WF9_0754WF90.00000UAA/GANX LSU rRNAC1901G1902A1903A1904G1905*U1891U1892A1893G1894cWWntSHntHWcWW
7 IL_3FTM_0023FTM0.33700UAA/GAN variationD+CRNA (12-mer)C-1G1G2A3A4*U46G47A48G49cWWntSHcWW
8 IL_3IGI_0093IGI0.45310UAA/GAN relatedAGroup IIC intronC190A191A192A193G194*U172G173A174G175cWWtSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAAA*UAUAAG2
CGGAA*UGAG2
CGAAG*UUAG2
GAAAG*UAAC1
CAAAG*UGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*AUAA2
GGA*GA2
GAA*UA2
AAA*AA1
AAA*GA1

Release history

Release3.803.813.823.83
Date2024-01-312024-02-282024-03-272024-04-24
StatusNew id, 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UAA/GAN variation (3)
  • UAA/GAN related (2)
  • (2)
  • UAA/GAN (1)
    • Basepair signature
    cWW-tSH-L-R-L-cWW
    Heat map statistics
    Min 0.14 | Avg 0.31 | Max 0.51
    Help

    Coloring options:

    IL_4V88_390:IL_4V88_390 = 0IL_4V88_390:IL_8C3A_398 = 0.1426IL_4V88_390:IL_2R8S_002 = 0.3981IL_4V88_390:IL_3FS0_001 = 0.4344IL_4V88_390:IL_5J7L_317 = 0.4463IL_4V88_390:IL_4WF9_075 = 0.4445IL_4V88_390:IL_3FTM_002 = 0.4901IL_4V88_390:IL_3IGI_009 = 0.508IL_8C3A_398:IL_4V88_390 = 0.1426IL_8C3A_398:IL_8C3A_398 = 0IL_8C3A_398:IL_2R8S_002 = 0.398IL_8C3A_398:IL_3FS0_001 = 0.4303IL_8C3A_398:IL_5J7L_317 = 0.4455IL_8C3A_398:IL_4WF9_075 = 0.4527IL_8C3A_398:IL_3FTM_002 = 0.4983IL_8C3A_398:IL_3IGI_009 = 0.4963IL_2R8S_002:IL_4V88_390 = 0.3981IL_2R8S_002:IL_8C3A_398 = 0.398IL_2R8S_002:IL_2R8S_002 = 0IL_2R8S_002:IL_3FS0_001 = 0.2218IL_2R8S_002:IL_5J7L_317 = 0.2087IL_2R8S_002:IL_4WF9_075 = 0.2798IL_2R8S_002:IL_3FTM_002 = 0.3253IL_2R8S_002:IL_3IGI_009 = 0.2848IL_3FS0_001:IL_4V88_390 = 0.4344IL_3FS0_001:IL_8C3A_398 = 0.4303IL_3FS0_001:IL_2R8S_002 = 0.2218IL_3FS0_001:IL_3FS0_001 = 0IL_3FS0_001:IL_5J7L_317 = 0.1697IL_3FS0_001:IL_4WF9_075 = 0.2562IL_3FS0_001:IL_3FTM_002 = 0.2828IL_3FS0_001:IL_3IGI_009 = 0.2924IL_5J7L_317:IL_4V88_390 = 0.4463IL_5J7L_317:IL_8C3A_398 = 0.4455IL_5J7L_317:IL_2R8S_002 = 0.2087IL_5J7L_317:IL_3FS0_001 = 0.1697IL_5J7L_317:IL_5J7L_317 = 0IL_5J7L_317:IL_4WF9_075 = 0.1438IL_5J7L_317:IL_3FTM_002 = 0.2777IL_5J7L_317:IL_3IGI_009 = 0.3569IL_4WF9_075:IL_4V88_390 = 0.4445IL_4WF9_075:IL_8C3A_398 = 0.4527IL_4WF9_075:IL_2R8S_002 = 0.2798IL_4WF9_075:IL_3FS0_001 = 0.2562IL_4WF9_075:IL_5J7L_317 = 0.1438IL_4WF9_075:IL_4WF9_075 = 0IL_4WF9_075:IL_3FTM_002 = 0.337IL_4WF9_075:IL_3IGI_009 = 0.4531IL_3FTM_002:IL_4V88_390 = 0.4901IL_3FTM_002:IL_8C3A_398 = 0.4983IL_3FTM_002:IL_2R8S_002 = 0.3253IL_3FTM_002:IL_3FS0_001 = 0.2828IL_3FTM_002:IL_5J7L_317 = 0.2777IL_3FTM_002:IL_4WF9_075 = 0.337IL_3FTM_002:IL_3FTM_002 = 0IL_3FTM_002:IL_3IGI_009 = 0.315IL_3IGI_009:IL_4V88_390 = 0.508IL_3IGI_009:IL_8C3A_398 = 0.4963IL_3IGI_009:IL_2R8S_002 = 0.2848IL_3IGI_009:IL_3FS0_001 = 0.2924IL_3IGI_009:IL_5J7L_317 = 0.3569IL_3IGI_009:IL_4WF9_075 = 0.4531IL_3IGI_009:IL_3FTM_002 = 0.315IL_3IGI_009:IL_3IGI_009 = 0IL_4V88_390IL_8C3A_398IL_2R8S_002IL_3FS0_001IL_5J7L_317IL_4WF9_075IL_3FTM_002IL_3IGI_009Discrepancy0.000.100.200.300.400.50
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