Motif IL_78231.1 Version IL_78231.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-5 | 3-7 | 3-8 | 4-7 | 4-8 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J9W_110 | 3J9W | 0.6811 | 0 | BA | LSU rRNA | A | 1243 | A | 1244 | G | 1245 | G | 1246 | G | 1247 | * | C | 1279 | G | 1280 | C | 1281 | U | 1282 | U | 1283 | cWW | cHW | ncHHa | cHW | cWW | |||
| 2 | IL_3J79_018 | 3J79 | 0.4863 | 0 | A | LSU rRNA | U | 628 | A | 629 | U | 630 | U | 631 | U | 632 | * | A | 523 | U | 524 | U | 525 | U | 526 | A | 527 | cWW | ncWW | cwW | cWw | cWW | |||
| 3 | IL_3J79_071 | 3J79 | 0.0000 | 0 | A | LSU rRNA | G | 1959 | U | 1960 | U | 1961 | U | 1962 | U | 1963 | * | A | 1906 | A | 1907 | U | 1908 | U | 1909 | C | 1910 | ncWw | cWW | ncWS | cWW | ||||
| 4 | IL_3JAM_029 | 3JAM | 0.8290 | 0 | 2 | SSU rRNA | G | 495 | G | 496 | G | 497 | U | 498 | C | 499 | * | G | 486 | G | 487 | C | 488 | C | 489 | C | 490 | cWW | ncSH | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAGGG*CGCUU | 1 |
| UAUUU*AUUUA | 1 |
| GUUUU*AAUUC | 1 |
| GGGUC*GGCCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGG*GCU | 1 |
| AUU*UUU | 1 |
| UUU*AUU | 1 |
| GGU*GCC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-cWW-L-R-cWW
- Heat map statistics
- Min 0.49 | Avg 0.57 | Max 0.96
Coloring options: