#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_3F1H_0103F1H0.24431A23S RRNAC280G281A282U284*A357U358A359G360cWWtSHtHWcWW
2 IL_1LNG_0021LNG0.00003B SRP S RNAC192G193A194C198*G223U224A225G226cWWtSHtHWcWW
3 IL_2ZJR_0542ZJR0.23091tSH-tHW (H)X LSU rRNAA1567A1568A1569G1571*C1451U1452A1453U1454cWWtSHtHWcWW
4 IL_3F1H_0553F1H0.29871A23S RRNAC1551G1552A1553G1555*C1437U1438A1439G1440cWWtSHtHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAU*AUAG1
CGAACCC*GUAG1
AAACG*CUAU1
CUAG*CGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*UA1
GAACC*UA1
AAC*UA1
UA*GAA1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_78938.1Only in the child motif
IL_81468.1
Compare
IL_2ZJR_054, IL_1LNG_002IL_3F1H_055, IL_3F1H_010IL_3PYO_053, IL_3PYO_010
Annotations
  • (3)
  • tSH-tHW (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.23 | Avg 0.21 | Max 0.38
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1248 s