Motif IL_78938.1 Version IL_78938.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3F1H_010 | 3F1H | 0.2443 | 1 | A | 23S RRNA | C | 280 | G | 281 | A | 282 | U | 284 | * | A | 357 | U | 358 | A | 359 | G | 360 | cWW | tSH | tHW | cWW | |
2 | IL_1LNG_002 | 1LNG | 0.0000 | 3 | B | SRP S RNA | C | 192 | G | 193 | A | 194 | C | 198 | * | G | 223 | U | 224 | A | 225 | G | 226 | cWW | tSH | tHW | cWW | |
3 | IL_2ZJR_054 | 2ZJR | 0.2309 | 1 | tSH-tHW (H) | X | LSU rRNA | A | 1567 | A | 1568 | A | 1569 | G | 1571 | * | C | 1451 | U | 1452 | A | 1453 | U | 1454 | cWW | tSH | tHW | cWW |
4 | IL_3F1H_055 | 3F1H | 0.2987 | 1 | A | 23S RRNA | C | 1551 | G | 1552 | A | 1553 | G | 1555 | * | C | 1437 | U | 1438 | A | 1439 | G | 1440 | cWW | tSH | tHW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAAU*AUAG | 1 |
CGAACCC*GUAG | 1 |
AAACG*CUAU | 1 |
CUAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*UA | 1 |
GAACC*UA | 1 |
AAC*UA | 1 |
UA*GAA | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_78938.1 | Only in the child motif |
---|---|---|---|
IL_81468.1 Compare | IL_2ZJR_054, IL_1LNG_002 | IL_3F1H_055, IL_3F1H_010 | IL_3PYO_053, IL_3PYO_010 |
- Annotations
-
- (3)
- tSH-tHW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.23 | Avg 0.21 | Max 0.38
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