Motif IL_79393.1 Version IL_79393.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-7 | 2-10 | 3-8 | 3-9 | 3-10 | 4-5 | 7-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_236 | 4V8P | 0.4131 | 0 | D1 | LSU rRNA | C | 2341 | U | 2342 | A | 2343 | U | 2344 | * | A | 1907 | A | 1908 | C | 1909 | A | 1910 | A | 1911 | U | 1912 | G | 1913 | cWW | tSH | cWW | |||||
| 2 | IL_3NDB_002 | 3NDB | 0.0000 | 0 | M | SRP RNA | G | 128 | U | 129 | C | 130 | C | 131 | * | G | 247 | G | 248 | G | 249 | G | 250 | U | 251 | G | 252 | C | 253 | cWW | ncSW | cWW | |||||
| 3 | IL_4LFB_048 | 4LFB | 0.6889 | 1 | A | SSU rRNA | G | 1124 | U | 1126 | G | 1127 | C | 1128 | * | G | 1143 | G | 1144 | C | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | cWW | ncWW | ncwW | ntSH | ncSW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAU*AACAAUG | 1 |
| GUCC*GGGGUGC | 1 |
| GUUGC*GGCACUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*ACAAU | 1 |
| UC*GGGUG | 1 |
| UUG*GCACU | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-R-R-R-L-cWW
- Heat map statistics
- Min 0.41 | Avg 0.40 | Max 0.71
Coloring options: