IL_3NDB_002

3D structure

PDB id

3NDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a signal sequence bound to the signal recognition particle

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCC*GGGGUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22829.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

3NDB|1|M|G|128
3NDB|1|M|U|129
3NDB|1|M|C|130
3NDB|1|M|C|131
*
3NDB|1|M|G|247
3NDB|1|M|G|248
3NDB|1|M|G|249
3NDB|1|M|G|250
3NDB|1|M|U|251
3NDB|1|M|G|252
3NDB|1|M|C|253

Current chains

Chain M

SRP RNA

Nearby chains