Motif IL_80097.3 Version IL_80097.3 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 2-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4LFB_053 | 4LFB | 0.4448 | 0 | Not an internal loop | A | SSU rRNA | G | 1274 | A | 1275 | G | 1276 | * | C | 1259 | C | 1260 | ncWW | ntHS | cWW | |
2 | IL_8C3A_422 | 8C3A | 0.2494 | 0 | Minor groove platform (H) | CM | SSU rRNA | A | 516 | C | 517 | A | 518 | * | U | 530 | U | 531 | cWW | cWW | ||
3 | IL_4V88_412 | 4V88 | 0.2451 | 0 | Minor groove platform | A6 | SSU rRNA | A | 518 | C | 519 | A | 520 | * | U | 532 | U | 533 | cWW | ntHS | cWW | |
4 | IL_4UYK_001 | 4UYK | 0.2437 | 0 | Minor groove platform | R | SRP RNA | C | 122 | A | 123 | C | 124 | * | G | 77 | G | 78 | tHS | cWW | ||
5 | IL_4LFB_054 | 4LFB | 0.2074 | 0 | Minor groove platform | A | SSU rRNA | C | 1260 | A | 1261 | C | 1262 | * | G | 1273 | G | 1274 | ncWW | tHS | cWW | |
6 | IL_6CZR_116 | 6CZR | 0.1881 | 0 | Minor groove platform | 1a | SSU rRNA | C | 55 | A | 56 | U | 57 | * | A | 352 | G | 353 | cWW | ntHS | cWW | |
7 | IL_5J7L_004 | 5J7L | 0.1421 | 0 | Minor groove platform | AA | SSU rRNA | C | 54 | A | 55 | U | 56 | * | A | 356 | G | 357 | cWW | tHS | cWW | |
8 | IL_4LFB_004 | 4LFB | 0.1108 | 0 | Minor groove platform | A | SSU rRNA | C | 54 | A | 55 | U | 56 | * | A | 356 | G | 357 | cWW | tHS | cWW | |
9 | IL_4V88_388 | 4V88 | 0.0974 | 0 | Minor groove platform | A6 | SSU rRNA | C | 50 | A | 51 | U | 52 | * | A | 428 | G | 429 | cWW | tHS | cWW | |
10 | IL_8C3A_396 | 8C3A | 0.0000 | 0 | Minor groove platform (H) | CM | SSU rRNA | C | 50 | A | 51 | U | 52 | * | A | 426 | G | 427 | cWW | tHS | cWW | |
11 | IL_8C3A_460 | 8C3A | 0.2154 | 0 | Minor groove platform (H) | CM | SSU rRNA | C | 1291 | U | 1292 | G | 1293 | * | C | 1302 | G | 1303 | ncSW | cWW | cWW | |
12 | IL_4V88_454 | 4V88 | 0.2184 | 0 | Minor groove platform | A6 | SSU rRNA | C | 1306 | U | 1307 | G | 1308 | * | C | 1317 | G | 1318 | cSH | cWW | tHS | cWW |
13 | IL_5J7L_064 | 5J7L | 0.5298 | 0 | Minor groove platform | AA | SSU rRNA | U | 1440 | A | 1441 | G | 1442 | * | C | 1460 | G | 1461 | cWW | cWW | ||
14 | IL_7TZS_003 | 7TZS | 0.5960 | 0 | Minor groove platform | X | TPP riboswitch (THI element) | C | 23 | C | 24 | U | 25 | * | A | 35 | G | 36 | ncSH | cWW | cWW | |
15 | IL_3K0J_002 | 3K0J | 0.6716 | 0 | Minor groove platform | E | RNA (87-MER) | C | 18 | C | 19 | U | 20 | * | A | 35 | G | 36 | ncSH | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAU*AG | 5 |
ACA*UU | 2 |
CAC*GG | 2 |
CUG*CG | 2 |
CCU*AG | 2 |
GAG*CC | 1 |
UAG*CG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 9 |
C* | 4 |
U* | 2 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (11)
- Minor groove platform (H) (3)
- Not an internal loop (1)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.39 | Max 0.92
Coloring options: