RNA 3D Hub //

Motif IL_80097.3 Version IL_80097.3 of this group appears in releases 3.88 to 3.88

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_4LFB_0534LFB0.44480Not an internal loopA SSU rRNAG1274A1275G1276*C1259C1260ncWWntHScWW
2 IL_8C3A_4228C3A0.24940Minor groove platformCM SSU rRNAA516C517A518*U530U531cWWcWW
3 IL_4V88_4124V880.24510Minor groove platformA6 SSU rRNAA518C519A520*U532U533cWWntHScWW
4 IL_4UYK_0014UYK0.24370Minor groove platformRSRP RNAC122A123C124*G77G78tHScWW
5 IL_4LFB_0544LFB0.20740Minor groove platformA SSU rRNAC1260A1261C1262*G1273G1274ncWWtHScWW
6 IL_6CZR_1166CZR0.18810Minor groove platform1a SSU rRNAC55A56U57*A352G353cWWntHScWW
7 IL_5J7L_0045J7L0.14210Minor groove platformAA SSU rRNAC54A55U56*A356G357cWWtHScWW
8 IL_4LFB_0044LFB0.11080Minor groove platformA SSU rRNAC54A55U56*A356G357cWWtHScWW
9 IL_4V88_3884V880.09740Minor groove platformA6 SSU rRNAC50A51U52*A428G429cWWtHScWW
10 IL_8C3A_3968C3A0.00000Minor groove platformCM SSU rRNAC50A51U52*A426G427cWWtHScWW
11 IL_8C3A_4608C3A0.21540Minor groove platformCM SSU rRNAC1291U1292G1293*C1302G1303ncSWcWWcWW
12 IL_4V88_4544V880.21840Minor groove platformA6 SSU rRNAC1306U1307G1308*C1317G1318cSHcWWtHScWW
13 IL_5J7L_0645J7L0.52980Single bulged AAA SSU rRNAU1440A1441G1442*C1460G1461cWWcWW
14 IL_7TZS_0037TZS0.59600Minor groove platform relatedXTPP riboswitch (THI element)C23C24U25*A35G36ncSHcWWcWW
15 IL_3K0J_0023K0J0.67160Minor groove platform relatedERNA (87-MER)C18C19U20*A35G36ncSHcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAU*AG5
ACA*UU2
CAC*GG2
CUG*CG2
CCU*AG2
GAG*CC1
UAG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
A*9
C*4
U*2

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (11)
  • Minor groove platform related (2)
  • Not an internal loop (1)
  • Single bulged A (1)
    • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.39 | Max 0.92
    Help

    Coloring options:

    IL_4LFB_053:IL_4LFB_053 = 0IL_4LFB_053:IL_8C3A_422 = 0.5313IL_4LFB_053:IL_4V88_412 = 0.5328IL_4LFB_053:IL_4UYK_001 = 0.4888IL_4LFB_053:IL_4LFB_054 = 0.5099IL_4LFB_053:IL_6CZR_116 = 0.451IL_4LFB_053:IL_5J7L_004 = 0.5189IL_4LFB_053:IL_4LFB_004 = 0.459IL_4LFB_053:IL_4V88_388 = 0.4993IL_4LFB_053:IL_8C3A_396 = 0.4448IL_4LFB_053:IL_8C3A_460 = 0.5471IL_4LFB_053:IL_4V88_454 = 0.4689IL_4LFB_053:IL_5J7L_064 = 0.7902IL_4LFB_053:IL_7TZS_003 = 0.8319IL_4LFB_053:IL_3K0J_002 = 0.9225IL_8C3A_422:IL_4LFB_053 = 0.5313IL_8C3A_422:IL_8C3A_422 = 0IL_8C3A_422:IL_4V88_412 = 0.2001IL_8C3A_422:IL_4UYK_001 = 0.3068IL_8C3A_422:IL_4LFB_054 = 0.3161IL_8C3A_422:IL_6CZR_116 = 0.6432IL_8C3A_422:IL_5J7L_004 = 0.6424IL_8C3A_422:IL_4LFB_004 = 0.3044IL_8C3A_422:IL_4V88_388 = 0.2776IL_8C3A_422:IL_8C3A_396 = 0.2494IL_8C3A_422:IL_8C3A_460 = 0.2901IL_8C3A_422:IL_4V88_454 = 0.3196IL_8C3A_422:IL_5J7L_064 = 0.7218IL_8C3A_422:IL_7TZS_003 = 0.7131IL_8C3A_422:IL_3K0J_002 = 0.7697IL_4V88_412:IL_4LFB_053 = 0.5328IL_4V88_412:IL_8C3A_422 = 0.2001IL_4V88_412:IL_4V88_412 = 0IL_4V88_412:IL_4UYK_001 = 0.291IL_4V88_412:IL_4LFB_054 = 0.3188IL_4V88_412:IL_6CZR_116 = 0.3836IL_4V88_412:IL_5J7L_004 = 0.3197IL_4V88_412:IL_4LFB_004 = 0.2942IL_4V88_412:IL_4V88_388 = 0.2601IL_4V88_412:IL_8C3A_396 = 0.2451IL_4V88_412:IL_8C3A_460 = 0.3379IL_4V88_412:IL_4V88_454 = 0.362IL_4V88_412:IL_5J7L_064 = 0.5288IL_4V88_412:IL_7TZS_003 = 0.5293IL_4V88_412:IL_3K0J_002 = 0.5978IL_4UYK_001:IL_4LFB_053 = 0.4888IL_4UYK_001:IL_8C3A_422 = 0.3068IL_4UYK_001:IL_4V88_412 = 0.291IL_4UYK_001:IL_4UYK_001 = 0IL_4UYK_001:IL_4LFB_054 = 0.1569IL_4UYK_001:IL_6CZR_116 = 0.3163IL_4UYK_001:IL_5J7L_004 = 0.2733IL_4UYK_001:IL_4LFB_004 = 0.2427IL_4UYK_001:IL_4V88_388 = 0.245IL_4UYK_001:IL_8C3A_396 = 0.2437IL_4UYK_001:IL_8C3A_460 = 0.2998IL_4UYK_001:IL_4V88_454 = 0.3141IL_4UYK_001:IL_5J7L_064 = 0.4628IL_4UYK_001:IL_7TZS_003 = 0.5566IL_4UYK_001:IL_3K0J_002 = 0.6775IL_4LFB_054:IL_4LFB_053 = 0.5099IL_4LFB_054:IL_8C3A_422 = 0.3161IL_4LFB_054:IL_4V88_412 = 0.3188IL_4LFB_054:IL_4UYK_001 = 0.1569IL_4LFB_054:IL_4LFB_054 = 0IL_4LFB_054:IL_6CZR_116 = 0.2799IL_4LFB_054:IL_5J7L_004 = 0.2077IL_4LFB_054:IL_4LFB_004 = 0.19IL_4LFB_054:IL_4V88_388 = 0.1871IL_4LFB_054:IL_8C3A_396 = 0.2074IL_4LFB_054:IL_8C3A_460 = 0.2774IL_4LFB_054:IL_4V88_454 = 0.2834IL_4LFB_054:IL_5J7L_064 = 0.4851IL_4LFB_054:IL_7TZS_003 = 0.6103IL_4LFB_054:IL_3K0J_002 = 0.715IL_6CZR_116:IL_4LFB_053 = 0.451IL_6CZR_116:IL_8C3A_422 = 0.6432IL_6CZR_116:IL_4V88_412 = 0.3836IL_6CZR_116:IL_4UYK_001 = 0.3163IL_6CZR_116:IL_4LFB_054 = 0.2799IL_6CZR_116:IL_6CZR_116 = 0IL_6CZR_116:IL_5J7L_004 = 0.1678IL_6CZR_116:IL_4LFB_004 = 0.1524IL_6CZR_116:IL_4V88_388 = 0.2009IL_6CZR_116:IL_8C3A_396 = 0.1881IL_6CZR_116:IL_8C3A_460 = 0.3159IL_6CZR_116:IL_4V88_454 = 0.3234IL_6CZR_116:IL_5J7L_064 = 0.6218IL_6CZR_116:IL_7TZS_003 = 0.7207IL_6CZR_116:IL_3K0J_002 = 0.7893IL_5J7L_004:IL_4LFB_053 = 0.5189IL_5J7L_004:IL_8C3A_422 = 0.6424IL_5J7L_004:IL_4V88_412 = 0.3197IL_5J7L_004:IL_4UYK_001 = 0.2733IL_5J7L_004:IL_4LFB_054 = 0.2077IL_5J7L_004:IL_6CZR_116 = 0.1678IL_5J7L_004:IL_5J7L_004 = 0IL_5J7L_004:IL_4LFB_004 = 0.0908IL_5J7L_004:IL_4V88_388 = 0.0915IL_5J7L_004:IL_8C3A_396 = 0.1421IL_5J7L_004:IL_8C3A_460 = 0.2832IL_5J7L_004:IL_4V88_454 = 0.3052IL_5J7L_004:IL_5J7L_064 = 0.5692IL_5J7L_004:IL_7TZS_003 = 0.67IL_5J7L_004:IL_3K0J_002 = 0.7381IL_4LFB_004:IL_4LFB_053 = 0.459IL_4LFB_004:IL_8C3A_422 = 0.3044IL_4LFB_004:IL_4V88_412 = 0.2942IL_4LFB_004:IL_4UYK_001 = 0.2427IL_4LFB_004:IL_4LFB_054 = 0.19IL_4LFB_004:IL_6CZR_116 = 0.1524IL_4LFB_004:IL_5J7L_004 = 0.0908IL_4LFB_004:IL_4LFB_004 = 0IL_4LFB_004:IL_4V88_388 = 0.0741IL_4LFB_004:IL_8C3A_396 = 0.1108IL_4LFB_004:IL_8C3A_460 = 0.282IL_4LFB_004:IL_4V88_454 = 0.2917IL_4LFB_004:IL_5J7L_064 = 0.5783IL_4LFB_004:IL_7TZS_003 = 0.6673IL_4LFB_004:IL_3K0J_002 = 0.7433IL_4V88_388:IL_4LFB_053 = 0.4993IL_4V88_388:IL_8C3A_422 = 0.2776IL_4V88_388:IL_4V88_412 = 0.2601IL_4V88_388:IL_4UYK_001 = 0.245IL_4V88_388:IL_4LFB_054 = 0.1871IL_4V88_388:IL_6CZR_116 = 0.2009IL_4V88_388:IL_5J7L_004 = 0.0915IL_4V88_388:IL_4LFB_004 = 0.0741IL_4V88_388:IL_4V88_388 = 0IL_4V88_388:IL_8C3A_396 = 0.0974IL_4V88_388:IL_8C3A_460 = 0.2599IL_4V88_388:IL_4V88_454 = 0.282IL_4V88_388:IL_5J7L_064 = 0.5481IL_4V88_388:IL_7TZS_003 = 0.6279IL_4V88_388:IL_3K0J_002 = 0.7005IL_8C3A_396:IL_4LFB_053 = 0.4448IL_8C3A_396:IL_8C3A_422 = 0.2494IL_8C3A_396:IL_4V88_412 = 0.2451IL_8C3A_396:IL_4UYK_001 = 0.2437IL_8C3A_396:IL_4LFB_054 = 0.2074IL_8C3A_396:IL_6CZR_116 = 0.1881IL_8C3A_396:IL_5J7L_004 = 0.1421IL_8C3A_396:IL_4LFB_004 = 0.1108IL_8C3A_396:IL_4V88_388 = 0.0974IL_8C3A_396:IL_8C3A_396 = 0IL_8C3A_396:IL_8C3A_460 = 0.2154IL_8C3A_396:IL_4V88_454 = 0.2184IL_8C3A_396:IL_5J7L_064 = 0.5298IL_8C3A_396:IL_7TZS_003 = 0.596IL_8C3A_396:IL_3K0J_002 = 0.6716IL_8C3A_460:IL_4LFB_053 = 0.5471IL_8C3A_460:IL_8C3A_422 = 0.2901IL_8C3A_460:IL_4V88_412 = 0.3379IL_8C3A_460:IL_4UYK_001 = 0.2998IL_8C3A_460:IL_4LFB_054 = 0.2774IL_8C3A_460:IL_6CZR_116 = 0.3159IL_8C3A_460:IL_5J7L_004 = 0.2832IL_8C3A_460:IL_4LFB_004 = 0.282IL_8C3A_460:IL_4V88_388 = 0.2599IL_8C3A_460:IL_8C3A_396 = 0.2154IL_8C3A_460:IL_8C3A_460 = 0IL_8C3A_460:IL_4V88_454 = 0.1493IL_8C3A_460:IL_5J7L_064 = 0.5909IL_8C3A_460:IL_7TZS_003 = 0.6247IL_8C3A_460:IL_3K0J_002 = 0.693IL_4V88_454:IL_4LFB_053 = 0.4689IL_4V88_454:IL_8C3A_422 = 0.3196IL_4V88_454:IL_4V88_412 = 0.362IL_4V88_454:IL_4UYK_001 = 0.3141IL_4V88_454:IL_4LFB_054 = 0.2834IL_4V88_454:IL_6CZR_116 = 0.3234IL_4V88_454:IL_5J7L_004 = 0.3052IL_4V88_454:IL_4LFB_004 = 0.2917IL_4V88_454:IL_4V88_388 = 0.282IL_4V88_454:IL_8C3A_396 = 0.2184IL_4V88_454:IL_8C3A_460 = 0.1493IL_4V88_454:IL_4V88_454 = 0IL_4V88_454:IL_5J7L_064 = 0.4287IL_4V88_454:IL_7TZS_003 = 0.5073IL_4V88_454:IL_3K0J_002 = 0.6044IL_5J7L_064:IL_4LFB_053 = 0.7902IL_5J7L_064:IL_8C3A_422 = 0.7218IL_5J7L_064:IL_4V88_412 = 0.5288IL_5J7L_064:IL_4UYK_001 = 0.4628IL_5J7L_064:IL_4LFB_054 = 0.4851IL_5J7L_064:IL_6CZR_116 = 0.6218IL_5J7L_064:IL_5J7L_004 = 0.5692IL_5J7L_064:IL_4LFB_004 = 0.5783IL_5J7L_064:IL_4V88_388 = 0.5481IL_5J7L_064:IL_8C3A_396 = 0.5298IL_5J7L_064:IL_8C3A_460 = 0.5909IL_5J7L_064:IL_4V88_454 = 0.4287IL_5J7L_064:IL_5J7L_064 = 0IL_5J7L_064:IL_7TZS_003 = 0.3132IL_5J7L_064:IL_3K0J_002 = 0.4581IL_7TZS_003:IL_4LFB_053 = 0.8319IL_7TZS_003:IL_8C3A_422 = 0.7131IL_7TZS_003:IL_4V88_412 = 0.5293IL_7TZS_003:IL_4UYK_001 = 0.5566IL_7TZS_003:IL_4LFB_054 = 0.6103IL_7TZS_003:IL_6CZR_116 = 0.7207IL_7TZS_003:IL_5J7L_004 = 0.67IL_7TZS_003:IL_4LFB_004 = 0.6673IL_7TZS_003:IL_4V88_388 = 0.6279IL_7TZS_003:IL_8C3A_396 = 0.596IL_7TZS_003:IL_8C3A_460 = 0.6247IL_7TZS_003:IL_4V88_454 = 0.5073IL_7TZS_003:IL_5J7L_064 = 0.3132IL_7TZS_003:IL_7TZS_003 = 0IL_7TZS_003:IL_3K0J_002 = 0.2234IL_3K0J_002:IL_4LFB_053 = 0.9225IL_3K0J_002:IL_8C3A_422 = 0.7697IL_3K0J_002:IL_4V88_412 = 0.5978IL_3K0J_002:IL_4UYK_001 = 0.6775IL_3K0J_002:IL_4LFB_054 = 0.715IL_3K0J_002:IL_6CZR_116 = 0.7893IL_3K0J_002:IL_5J7L_004 = 0.7381IL_3K0J_002:IL_4LFB_004 = 0.7433IL_3K0J_002:IL_4V88_388 = 0.7005IL_3K0J_002:IL_8C3A_396 = 0.6716IL_3K0J_002:IL_8C3A_460 = 0.693IL_3K0J_002:IL_4V88_454 = 0.6044IL_3K0J_002:IL_5J7L_064 = 0.4581IL_3K0J_002:IL_7TZS_003 = 0.2234IL_3K0J_002:IL_3K0J_002 = 0IL_4LFB_053IL_8C3A_422IL_4V88_412IL_4UYK_001IL_4LFB_054IL_6CZR_116IL_5J7L_004IL_4LFB_004IL_4V88_388IL_8C3A_396IL_8C3A_460IL_4V88_454IL_5J7L_064IL_7TZS_003IL_3K0J_002Discrepancy0.000.200.400.600.80
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