#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_4LFB_0534LFB0.44480Not an internal loopA SSU rRNAG1274A1275G1276*C1259C1260ncWWntHScWW
2 IL_8C3A_4228C3A0.24940Minor groove platform (H)CM SSU rRNAA516C517A518*U530U531cWWcWW
3 IL_4V88_4124V880.24510Minor groove platformA6 SSU rRNAA518C519A520*U532U533cWWntHScWW
4 IL_4UYK_0014UYK0.24370Minor groove platformRSRP RNAC122A123C124*G77G78tHScWW
5 IL_4LFB_0544LFB0.20740Minor groove platformA SSU rRNAC1260A1261C1262*G1273G1274ncWWtHScWW
6 IL_6CZR_1166CZR0.18810Minor groove platform1a SSU rRNAC55A56U57*A352G353cWWntHScWW
7 IL_5J7L_0045J7L0.14210Minor groove platformAA SSU rRNAC54A55U56*A356G357cWWtHScWW
8 IL_4LFB_0044LFB0.11080Minor groove platformA SSU rRNAC54A55U56*A356G357cWWtHScWW
9 IL_4V88_3884V880.09740Minor groove platformA6 SSU rRNAC50A51U52*A428G429cWWtHScWW
10 IL_8C3A_3968C3A0.00000Minor groove platform (H)CM SSU rRNAC50A51U52*A426G427cWWtHScWW
11 IL_8C3A_4608C3A0.21540Minor groove platform (H)CM SSU rRNAC1291U1292G1293*C1302G1303ncSWcWWcWW
12 IL_4V88_4544V880.21840Minor groove platformA6 SSU rRNAC1306U1307G1308*C1317G1318cSHcWWtHScWW
13 IL_5J7L_0645J7L0.52980Minor groove platformAA SSU rRNAU1440A1441G1442*C1460G1461cWWcWW
14 IL_7TZS_0037TZS0.59600Minor groove platformXTPP riboswitch (THI element)C23C24U25*A35G36ncSHcWWcWW
15 IL_3K0J_0023K0J0.67160Minor groove platformERNA (87-MER)C18C19U20*A35G36ncSHcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAU*AG5
ACA*UU2
CAC*GG2
CUG*CG2
CCU*AG2
GAG*CC1
UAG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
A*9
C*4
U*2

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (11)
  • Minor groove platform (H) (3)
  • Not an internal loop (1)
  • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.39 | Max 0.92
    Help

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