Motif IL_80138.1 Version IL_80138.1 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_064 | 4LFB | 0.5650 | 1 | A | SSU rRNA | C | 1459 | A | 1460 | G | 1461 | * | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | cWW | tHS | cWW | |
| 2 | IL_5UNE_002 | 5UNE | 0.0000 | 1 | Isolated basepair with bulged bases | A+B | RNA (47-MER) | U | 10 | G | 11 | G | 12 | * | C | 33 | G | 34 | G | 35 | A | 37 | A | 38 | cWW | ntHS | cWW |
| 3 | IL_1MFQ_006 | 1MFQ | 0.8043 | 4 | A | SRP RNA | C | 212 | A | 215 | A | 216 | * | U | 181 | G | 182 | A | 183 | C | 186 | G | 187 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CGGGAG | 1 |
| UGG*CGGAAA | 1 |
| CAAAA*UGAACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GGGA | 1 |
| G*GGAA | 1 |
| AAA*GAACC | 1 |
- Annotations
-
- (2)
- Isolated basepair with bulged bases (1)
- Basepair signature
- cWW-R-R-tHS-cWW
- Heat map statistics
- Min 0.57 | Avg 0.52 | Max 0.96
Coloring options: