#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-43-4
1 IL_1FJG_0121FJG0.73561 A SSU rRNAU249A250U252*A274G275cWWcWW
2 IL_3G78_0123G780.60250 AGroup II catalytic intron D1-D4-1C296A297U298*G320G321cWWcWW
3 IL_4A1B_0694A1B0.00000 126S RRNAG1643A1644C1645*G1849C1850cWWcWW
4 IL_3U5H_1073U5H0.34681 525S rRNAG2770U2771C2773*G2787C2788cWWcWW
5 IL_2XZM_0532XZM0.46930 A18S RRNAA1030A1031U1032*G1037U1038cWWncWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAGU*AG1
CAU*GG1
GAC*GC1
GUCC*GC1
AAU*GU1
Non-Watson-Crick part of the motif
SequenceCounts
A*3
AG*1
UC*1

Release history

Release0.70.80.9
Date2013-02-172013-02-172013-02-17
StatusUpdated, 1 parentExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_80179.2Only in the parent motif
IL_80179.1
Compare
IL_3U5H_107, IL_3G78_012, IL_4A1B_069, IL_2XZM_053, IL_1FJG_012IL_2XZM_040, IL_3U5H_078

Children motifs

Child motifCommon motif instancesOnly in IL_80179.2Only in the child motif
IL_10005.1
Compare
IL_4A1B_069, IL_2XZM_053, IL_1FJG_012IL_3U5H_107, IL_3G78_012IL_1S72_017
IL_69901.1
Compare
IL_3U5H_107IL_3G78_012, IL_4A1B_069, IL_2XZM_053, IL_1FJG_012IL_2XZM_026
Annotations
Basepair signature
cWW-L-cWW
Heat map statistics
Min 0.35 | Avg 0.53 | Max 0.95
Help

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.082 s