Motif IL_80179.2 Version IL_80179.2 of this group appears in releases 0.7 to 0.9
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_012 | 1FJG | 0.7356 | 1 | A | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW | ||
| 2 | IL_3G78_012 | 3G78 | 0.6025 | 0 | A | Group II catalytic intron D1-D4-1 | C | 296 | A | 297 | U | 298 | * | G | 320 | G | 321 | cWW | cWW | ||
| 3 | IL_4A1B_069 | 4A1B | 0.0000 | 0 | 1 | 26S RRNA | G | 1643 | A | 1644 | C | 1645 | * | G | 1849 | C | 1850 | cWW | cWW | ||
| 4 | IL_3U5H_107 | 3U5H | 0.3468 | 1 | 5 | 25S rRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | cWW | cWW | ||
| 5 | IL_2XZM_053 | 2XZM | 0.4693 | 0 | A | 18S RRNA | A | 1030 | A | 1031 | U | 1032 | * | G | 1037 | U | 1038 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGU*AG | 1 |
| CAU*GG | 1 |
| GAC*GC | 1 |
| GUCC*GC | 1 |
| AAU*GU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 3 |
| AG* | 1 |
| UC* | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_80179.2 | Only in the parent motif |
|---|---|---|---|
| IL_80179.1 Compare | IL_3U5H_107, IL_3G78_012, IL_4A1B_069, IL_2XZM_053, IL_1FJG_012 | IL_2XZM_040, IL_3U5H_078 |
Children motifs
| Child motif | Common motif instances | Only in IL_80179.2 | Only in the child motif |
|---|---|---|---|
| IL_10005.1 Compare | IL_4A1B_069, IL_2XZM_053, IL_1FJG_012 | IL_3U5H_107, IL_3G78_012 | IL_1S72_017 |
| IL_69901.1 Compare | IL_3U5H_107 | IL_3G78_012, IL_4A1B_069, IL_2XZM_053, IL_1FJG_012 | IL_2XZM_026 |
Coloring options: