Motif IL_80179.1 Version IL_80179.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_107 | 3U5H | 0.9487 | 1 | 5 | 25S rRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | cWW | cWW | |
| 2 | IL_3G78_012 | 3G78 | 0.6188 | 0 | A | Group II catalytic intron D1-D4-1 | C | 296 | A | 297 | U | 298 | * | G | 320 | G | 321 | cWW | cWW | |
| 3 | IL_4A1B_069 | 4A1B | 0.4693 | 0 | 1 | 26S RRNA | G | 1643 | A | 1644 | C | 1645 | * | G | 1849 | C | 1850 | cWW | cWW | |
| 4 | IL_2XZM_040 | 2XZM | 0.4685 | 0 | A | 18S RRNA | G | 705 | U | 706 | U | 707 | * | G | 695 | C | 696 | cWW | ncWW | |
| 5 | IL_3U5H_078 | 3U5H | 0.3831 | 0 | 5 | 25S rRNA | G | 1776 | U | 1777 | G | 1778 | * | C | 1670 | C | 1671 | cWW | cWW | |
| 6 | IL_2XZM_053 | 2XZM | 0.0000 | 0 | A | 18S RRNA | A | 1030 | A | 1031 | U | 1032 | * | G | 1037 | U | 1038 | cWW | ncWW | ncWW |
| 7 | IL_1FJG_012 | 1FJG | 0.6114 | 1 | A | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCC*GC | 1 |
| CAU*GG | 1 |
| GAC*GC | 1 |
| GUU*GC | 1 |
| GUG*CC | 1 |
| AAU*GU | 1 |
| UAGU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 3 |
| U* | 2 |
| UC* | 1 |
| AG* | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_80179.1 | Only in the parent motif |
|---|---|---|---|
| IL_33235.1 Compare | IL_2XZM_040, IL_2XZM_053 | IL_3U5H_107, IL_3G78_012, IL_4A1B_069, IL_3U5H_078, IL_1FJG_012 | IL_3PYO_065, IL_3PYO_100, IL_3O58_088, IL_2ZJR_105, IL_2AW7_025, IL_3O58_102, IL_1FJG_051, IL_2AW7_035, IL_3PYO_054, IL_3O30_055 |
| IL_68486.1 Compare | IL_3G78_012 | IL_3U5H_107, IL_2XZM_040, IL_3U5H_078, IL_2XZM_053, IL_4A1B_069, IL_1FJG_012 | IL_1S72_017 |
| IL_87608.1 Compare | IL_1FJG_012 | IL_3U5H_107, IL_3U5H_078, IL_2XZM_040, IL_3G78_012, IL_2XZM_053, IL_4A1B_069 | IL_3O58_135, IL_2ZJR_023, IL_3O58_124, IL_3O30_018, IL_2QWY_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_80179.1 | Only in the child motif |
|---|---|---|---|
| IL_80179.2 Compare | IL_3U5H_107, IL_3G78_012, IL_4A1B_069, IL_2XZM_053, IL_1FJG_012 | IL_2XZM_040, IL_3U5H_078 | |
| IL_46648.1 Compare | IL_2XZM_040, IL_3U5H_078 | IL_3U5H_107, IL_3G78_012, IL_4A1B_069, IL_1FJG_012, IL_2XZM_053 | IL_4A1B_114, IL_3V2F_096, IL_2QBG_098, IL_2ZJR_092, IL_3U5H_097, IL_1S72_087, IL_3U5H_117, IL_2QWY_005, IL_4A1B_094 |
- Annotations
-
- (7)
- Basepair signature
- 05_cWW--cWW
- Heat map statistics
- Min 0.21 | Avg 0.50 | Max 0.95
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