Motif IL_10005.1 Version IL_10005.1 of this group appears in releases 0.10 to 0.12
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_017 | 1S72 | 0.8519 | 1 | 0 | LSU rRNA | A | 602 | A | 603 | C | 605 | * | G | 554 | U | 555 | cWW | cWW | |
| 2 | IL_1FJG_012 | 1FJG | 0.7356 | 1 | A | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW | |
| 3 | IL_4A1B_069 | 4A1B | 0.0000 | 0 | 1 | 26S RRNA | G | 1643 | A | 1644 | C | 1645 | * | G | 1849 | C | 1850 | cWW | cWW | |
| 4 | IL_2XZM_053 | 2XZM | 0.4693 | 0 | A | 18S RRNA | A | 1030 | A | 1031 | U | 1032 | * | G | 1037 | U | 1038 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAGC*GU | 1 |
| UAGU*AG | 1 |
| GAC*GC | 1 |
| AAU*GU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AG* | 2 |
| A* | 2 |
Release history
| Release | 0.10 | 0.11 | 0.12 |
|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | New id, 2 parents | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_10005.1 | Only in the parent motif |
|---|---|---|---|
| IL_80179.2 Compare | IL_4A1B_069, IL_2XZM_053, IL_1FJG_012 | IL_1S72_017 | IL_3U5H_107, IL_3G78_012 |
| IL_80755.1 Compare | IL_1S72_017 | IL_4A1B_069, IL_2XZM_053, IL_1FJG_012 | IL_1XJR_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_10005.1 | Only in the child motif |
|---|---|---|---|
| IL_87218.1 Compare | IL_4A1B_069, IL_1FJG_012 | IL_2XZM_053, IL_1S72_017 | IL_2ZJR_023, IL_3U5F_020 |
| IL_42397.1 Compare | IL_1S72_017 | IL_4A1B_069, IL_2XZM_053, IL_1FJG_012 | IL_1XJR_004 |
| IL_27892.1 Compare | IL_2XZM_053 | IL_4A1B_069, IL_1FJG_012, IL_1S72_017 | IL_3U5H_107 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.45 | Avg 0.55 | Max 0.98
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