Motif IL_80545.1 Version IL_80545.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_426 | 4V88 | 0.6970 | 1 | Isolated non-canonical cWW pair | A6 | SSU rRNA | G | 819 | U | 821 | U | 822 | * | A | 850 | U | 851 | C | 852 | cWW | cWw | cWW |
| 2 | IL_4V88_457 | 4V88 | 0.6588 | 2 | Isolated non-canonical cWW pair | A6 | SSU rRNA | U | 1369 | U | 1372 | C | 1373 | * | G | 1352 | U | 1353 | G | 1354 | cWW | cWw | cWW |
| 3 | IL_5B2P_002 | 5B2P | 0.6776 | 1 | Isolated non-canonical cWW pair | B | Guide RNA | G | 28 | U | 30 | G | 31 | * | C | 44 | U | 45 | C | 46 | cWW | cWw | cWW |
| 4 | IL_5J7L_003 | 5J7L | 0.2168 | 3 | AA | SSU rRNA | C | 47 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | ntSs | cWW | |
| 5 | IL_4LFB_003 | 4LFB | 0.1499 | 3 | A | SSU rRNA | C | 47 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | ||
| 6 | IL_6CZR_115 | 6CZR | 0.0000 | 3 | 1a | SSU rRNA | C | 48 | A | 51 | G | 53 | * | U | 355 | A | 356 | G | 357 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAAG*UAG | 2 |
| GUUU*AUC | 1 |
| UUAUC*GUG | 1 |
| GUUG*CUC | 1 |
| CCUAAC*GGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*U | 2 |
| CUAA*A | 2 |
| UAU*U | 1 |
| CUAA*G | 1 |
- Annotations
-
- (3)
- Isolated non-canonical cWW pair (3)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.42 | Max 0.72
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