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Motif IL_80663.9 Version IL_80663.9 of this group appears in releases 3.54 to 3.61

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-41-52-34-5
1 IL_3SUX_0023SUX0.51470Major groove platformX THF riboswitchG37A38*U47G48U49cWWncWW
2 IL_3SUX_0053SUX0.51470Major groove platformX THF riboswitchG37||||17_555A38||||17_555*U47||||17_555G48||||17_555U49||||17_555cWWncWW
3 IL_6CZR_1406CZR0.39760Major groove platform1a SSU rRNAG641G642*C731C732C733cWWcWW
4 IL_5TBW_1025TBW0.30870Major groove platform1 LSU rRNAG2823G2824*U2865U2866C2867cWWcWWncSH
5 IL_7RQB_0907RQB0.26780Major groove platform1A LSU rRNAG2414G2415*U2401C2402C2403cWWcWWcSH
6 IL_1XJR_0021XJR0.25240Major groove platformAs2m RNAG13G14*U37A38C39cWWcWWcSH
7 IL_7A0S_0827A0S0.17580Major groove platformX LSU rRNAG2393G2394*U2380A2381C2382cWWcWWcSH
8 IL_3OXE_0033OXE0.15320Major groove platformAdomain II of glycine riboswitchG35G36*C68U69C70cWWcWWcSH
9 IL_4WF9_0904WF90.12080Major groove platformX LSU rRNAG2481G2482*C2523A2524C2525cWWcWWcSH
10 IL_7A0S_0847A0S0.09110Major groove platformX LSU rRNAG2433G2434*C2475A2476C2477cWWcWWcSH
11 IL_7RQB_0927RQB0.00000Major groove platform1A LSU rRNAG2454G2455*C2496A2497C2498cWWcWWcSH
12 IL_4V9F_0824V9F0.12330Major groove platform0 LSU rRNAG2489A2490*U2531A2532C2533cWWcWWcSH
13 IL_1S03_0041S030.15860Major groove platformA47-MERU16G17*C34A35A36tHScWWcWWcSH
14 IL_1S03_0081S030.16390Major groove platformB47-MERU16G17*C34A35A36tHScWWcWWcSH
15 IL_4OQU_0024OQU0.16350Major groove platformASAM-I/IV riboswitchU29G30*C42A43A44cWWcWWncSH
16 IL_4LFB_0244LFB0.26740Major groove platformA SSU rRNAG644C645*G594G595C596ntHScWWcWWncSH
17 IL_3D0U_0043D0U0.17781Major groove platform; stack outside cWWALysine Riboswitch RNAG51G52*C35A36C38cWWcWWcSH
18 IL_3NKB_0023NKB0.28780Major groove platformBHepatitis delta virus ribozymeU47C48*G55U56A57cWWcWWcSH
19 IL_1G1X_0021G1X0.29250Major groove platformD+E16S RIBOSOMAL RNAG657G658*C747C748C749cWWcWWncSH
20 IL_1G1X_0051G1X0.27390Major groove platformI+J16S RIBOSOMAL RNAG657G658*C747C748C749cWWcWWncSH
21 IL_4LFB_0284LFB0.26890Major groove platformA SSU rRNAG657G658*C747C748C749cWWcWW
22 IL_5T5A_0025T5A0.21780Major groove platformADNA/RNA (71-MER)G10G11*C50G51C52cWWcWWncSH
23 IL_5Y85_0055Y850.20850Major groove platformC+DRNA (18-mer) + DNA/RNA (50-MER)G9G10*C40G41C42cWWcWW
24 IL_4V9F_0444V9F0.26811Major groove platform0 LSU rRNAU1205U1206*A1191A1193A1194ntHScWWcWWcSH
25 IL_5TBW_1045TBW0.42980Major groove platform1 LSU rRNAU2862G2863*U2826U2827G2828cWWcWW
26 IL_5J7L_0285J7L0.26070Major groove platformAA SSU rRNAU644G645*U594A595A596ntHScWWcWWcSH
27 IL_1I6U_0011I6U0.26610Major groove platformC16S RRNA FRAGMENTU28G29*U9A10A11ntHScWWcWWcSH
28 IL_4WF9_0914WF90.24230Major groove platformX LSU rRNAU2520G2521*U2484U2485A2486cWWcWWcSH
29 IL_7A0S_0857A0S0.29510Major groove platformX LSU rRNAU2472G2473*U2436G2437A2438ntHScWWcWW
30 IL_5J7L_3205J7L0.18680Major groove platformDA LSU rRNAU2617G2618*C2050A2051A2052tHScWWcWWcSH
31 IL_7RQB_0787RQB0.24010Major groove platform1A LSU rRNAC2617G2618*C2050A2051G2052cWWcWWcSH
32 IL_7A0S_0737A0S0.25630Major groove platformX LSU rRNAC2596G2597*C2033A2034G2035cWWcWWcSH
33 IL_4WF9_0784WF90.24400Major groove platformX LSU rRNAC2644G2645*C2077A2078G2079cWWcWWcSH
34 IL_5J7L_2645J7L0.26320Major groove platformDA LSU rRNAG757C758*G738A739C740cWWcWWcSH
35 IL_4WF9_0264WF90.20160Major groove platformX LSU rRNAG802C803*G783A784C785cWWcWWcSH
36 IL_4QLM_0044QLM0.43091Major groove platform; stack outside cWWA cyclic di-AMP riboswitchG39G40*C91G92C94tHScWWcWW
37 IL_1KUQ_0011KUQ0.39491Major groove platform; stack outside cWWB16S RIBOSOMAL RNA FRAGMENTG18A19*U50G51C53tHScWWcWWncSH
38 IL_5J7L_0315J7L0.35261Major groove platform; stack outside cWWAA SSU rRNAG654A655*U751G752C754tHScWWcWWncSH
39 IL_4LFB_0274LFB0.36631Major groove platform; stack outside cWWA SSU rRNAG654A655*U751G752C754tHScWWcWW
40 IL_1G1X_0011G1X0.40011Major groove platform; stack outside cWWD+E16S RIBOSOMAL RNAG654A655*U751G752C754tHScWWcWWncSH
41 IL_1G1X_0041G1X0.39621Major groove platform; stack outside cWWI+J16S RIBOSOMAL RNAG654A655*U751G752C754tHScWWcWWncSH
42 IL_7A0S_0617A0S0.44721Major groove platform; stack outside cWWX LSU rRNAU1976C1977*G1683G1684A1686tHScWWcWW
43 IL_5TBW_0765TBW0.46031Major groove platform; stack outside cWW1 LSU rRNAU2336C2337*G1898G1899A1901tHScWWcWW
44 IL_5J7L_3065J7L0.42381Major groove platform; stack outside cWWDA LSU rRNAU1993C1994*G1666G1667A1669tHScWWcWW
45 IL_7RQB_0667RQB0.42431Major groove platform; stack outside cWW1A LSU rRNAU1993C1994*G1666G1667A1669tHScWWcWW
46 IL_5TBW_1075TBW0.67630Major groove platform1 LSU rRNAC2876G2877*U2949G2950G2951cWWcWW
47 IL_5J7L_3525J7L0.79520Major groove intercalationDA LSU rRNAG2838G2839*U2878A2879C2880cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GA*UGAC5
GG*CCC4
UG*CAA4
UC*GGAA4
GG*UAC3
GG*CAC3
CG*CAG3
GA*UGU2
GG*CGC2
UG*UAA2
GC*GAC2
GG*UUC1
GG*UCC1
GG*CUC1
GA*UAC1
GC*GGC1
GG*CAUC1
UC*GUA1
UU*AAAA1
UG*UUG1
UG*UUA1
UG*UGA1
GG*CGUC1
CG*UGG1
Non-Watson-Crick part of the motif
SequenceCounts
*A18
*GA9
*G7
*C5
*U5
*AU1
*AA1
*GU1

Release history

Release3.543.553.563.573.583.593.603.61
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-17
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (35)
  • Major groove platform; stack outside cWW (11)
  • Major groove intercalation (1)
    • Basepair signature
    cWW-tHS-cSH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.41 | Max 0.97
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