Motif IL_81328.4 Version IL_81328.4 of this group appears in releases 3.15 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_268 | 5J7L | 0.6841 | 1 | Stack outside cWW | DA | LSU rRNA | U | 847||A | C | 848 | * | G | 930 | U | 932 | A | 933 | cWW | cWW |
| 2 | IL_1NTA_001 | 1NTA | 0.7132 | 0 | Stack outside cWW | B+A | RNA (18-mer) | G | 114 | G | 115 | * | C | 5 | G | 6 | C | 7 | cWW | cWW |
| 3 | IL_5WT1_001 | 5WT1 | 0.4616 | 0 | Stack outside cWW | C | tRNA | A | 26 | C | 27 | * | G | 43 | G | 44 | U | 45 | cWW | cWW |
| 4 | IL_5XTM_004 | 5XTM | 0.1814 | 0 | Major groove intercalation | D | RNA (47-MER) | A | 44 | G | 45 | * | U | 3 | A | 4 | U | 5 | cWW | cWW |
| 5 | IL_5DCV_005 | 5DCV | 0.0000 | 0 | Major groove intercalation | D | RNA (47-MER) | A | 48 | G | 49 | * | U | 3 | A | 4 | U | 5 | cWW | cWW |
| 6 | IL_1U6B_010 | 1U6B | 0.1118 | 0 | Major groove intercalation | B | 197-MER | A | 150 | G | 151 | * | U | 160 | A | 161 | U | 162 | cWW | cWW |
| 7 | IL_5VCI_004 | 5VCI | 0.1717 | 0 | Major groove intercalation | A+B | RNA (22-mer) + RNA (12-mer) | A | 11 | G | 12 | * | U | 2 | A | 3 | U | 4 | cWW | cWW |
| 8 | IL_4PCJ_004 | 4PCJ | 0.2034 | 0 | Major groove intercalation | A | trCUG-3('5) | A | 11 | G | 12 | * | U | 25 | A | 26 | U | 27 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAU | 5 |
| GUUA*UC | 1 |
| GG*CGC | 1 |
| AC*GGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 5 |
| *G | 2 |
| UU* | 1 |
Release history
| Release | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove intercalation (5)
- Stack outside cWW (3)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.41 | Max 0.82
Coloring options: