Motif IL_81328.5 Version IL_81328.5 of this group appears in releases 3.25 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_268 | 5J7L | 0.6841 | 1 | Stack outside cWW | DA | LSU rRNA | U | 847||A | C | 848 | * | G | 930 | U | 932 | A | 933 | cWW | cWW |
| 2 | IL_5WT1_001 | 5WT1 | 0.4616 | 0 | Stack outside cWW | C | tRNA | A | 26 | C | 27 | * | G | 43 | G | 44 | U | 45 | cWW | cWW |
| 3 | IL_5XTM_004 | 5XTM | 0.1814 | 0 | Major groove intercalation | D | RNA (47-MER) | A | 44 | G | 45 | * | U | 3 | A | 4 | U | 5 | cWW | cWW |
| 4 | IL_5DCV_005 | 5DCV | 0.0000 | 0 | Major groove intercalation | D | RNA (47-MER) | A | 48 | G | 49 | * | U | 3 | A | 4 | U | 5 | cWW | cWW |
| 5 | IL_1U6B_010 | 1U6B | 0.1118 | 0 | Major groove intercalation | B | 197-MER | A | 150 | G | 151 | * | U | 160 | A | 161 | U | 162 | cWW | cWW |
| 6 | IL_5VCI_004 | 5VCI | 0.1717 | 0 | Major groove intercalation | A+B | RNA (22-mer) + RNA (12-mer) | A | 11 | G | 12 | * | U | 2 | A | 3 | U | 4 | cWW | cWW |
| 7 | IL_4PCJ_004 | 4PCJ | 0.2034 | 0 | Major groove intercalation | A | trCUG-3('5) | A | 11 | G | 12 | * | U | 25 | A | 26 | U | 27 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAU | 5 |
| GUUA*UC | 1 |
| AC*GGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 5 |
| UU* | 1 |
| *G | 1 |
Release history
| Release | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove intercalation (5)
- Stack outside cWW (2)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.35 | Max 0.82
Coloring options: