Motif IL_81522.4 Version IL_81522.4 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-4 | 3-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4M4O_005 | 4M4O | 0.1118 | 3 | Major groove minor groove platform with intercalation; mini C-loop | B | RNA (59-MER) | G | 28 | U | 30 | A | 31 | C | 32 | * | G | 36 | C | 39 | cWW | ncSH | cWS | cWW |
| 2 | IL_4M6D_014 | 4M6D | 0.0000 | 3 | Major groove minor groove platform with intercalation; mini C-loop | H | aptamer | G | 28 | U | 30 | A | 31 | C | 32 | * | G | 36 | C | 39 | cWW | ncSH | cWS | cWW |
| 3 | IL_6XJQ_003 | 6XJQ | 0.6677 | 1 | A | Self-alkylating ribozyme (58-MER) | U | 42 | A | 43 | G | 45 | C | 46 | * | G | 16 | G | 17 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAC*GUUC | 2 |
| UAGGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUA*UU | 2 |
| AGG* | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform with intercalation; mini C-loop (2)
- (1)
- Basepair signature
- cWW-cWS-L-cWW
- Heat map statistics
- Min 0.11 | Avg 0.33 | Max 0.69
Coloring options: