Motif IL_81892.1 Version IL_81892.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-10 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4QK8_001 | 4QK8 | 0.1412 | 0 | A | C-di-AMP riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 30 | C | 31 | * | G | 94 | C | 95 | U | 96 | A | 97 | A | 98 | C | 99 | cWW | tSH | ncBW | cWW | |
| 2 | IL_4QLM_002 | 4QLM | 0.0000 | 0 | A | cyclic di-AMP riboswitch | G | 27 | G | 28 | A | 29 | C | 30 | C | 31 | C | 32 | * | G | 96 | C | 97 | U | 98 | A | 99 | A | 100 | C | 101 | cWW | tSH | ncBW | cWW | |
| 3 | IL_4QK9_001 | 4QK9 | 0.1164 | 0 | A | C-di-AMP riboswitch | G | 29 | G | 30 | A | 31 | C | 32 | C | 33 | C | 34 | * | G | 98 | C | 99 | U | 100 | A | 101 | A | 102 | C | 103 | cWW | tSH | ncBW | cWW | |
| 4 | IL_4W92_001 | 4W92 | 0.1569 | 0 | C | cyclic di-AMP riboswitch | G | 28 | G | 29 | A | 30 | C | 31 | C | 32 | C | 33 | * | G | 101 | C | 102 | U | 103 | A | 104 | A | 105 | C | 106 | cWW | tSH | ncBW | cWW | |
| 5 | IL_4V19_057 | 4V19 | 0.4813 | 0 | A | LSU rRNA | A | 1532 | U | 1533 | U | 1534 | A | 1535 | A | 1536 | C | 1537 | * | G | 1505 | A | 1506 | U | 1507 | A | 1508 | A | 1509 | U | 1510 | cWW | ntHS | cWW | ||
| 6 | IL_3JCS_081 | 3JCS | 0.6552 | 0 | 2 | LSU rRNA | U | 457 | C | 458 | A | 459 | A | 460 | C | 461 | G | 462 | * | C | 475 | C | 476 | G | 477 | A | 478 | C | 479 | G | 480 | cWW | ntWH | ntHS | ncBW | cWW |
| 7 | IL_5AJ3_035 | 5AJ3 | 0.7859 | 0 | A | SSU rRNA | C | 749 | G | 750 | A | 751 | A | 752 | A | 753 | G | 754 | * | C | 773 | C | 774 | A | 775 | A | 776 | A | 777 | G | 778 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACCC*GCUAAC | 3 |
| GGAACC*GCUAAC | 1 |
| AUUAAC*GAUAAU | 1 |
| UCAACG*CCGACG | 1 |
| CGAAAG*CCAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACC*CUAA | 3 |
| GAAC*CUAA | 1 |
| UUAA*AUAA | 1 |
| CAAC*CGAC | 1 |
| GAAA*CAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-R-tHS-L-bif-cWW
- Heat map statistics
- Min 0.12 | Avg 0.45 | Max 0.87
Coloring options: