Motif IL_82768.1 Version IL_82768.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 3-4 | 4-8 | 5-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3G78_014 | 3G78 | 0.3090 | 0 | A | Group II catalytic intron D1-D4-1 | C | 346 | U | 347 | A | 348 | A | 349 | G | 350 | * | U | 332 | A | 333 | U | 334 | G | 335 | cWW | tWH | cSH | ncWW | cWW | |
2 | IL_1KXK_002 | 1KXK | 0.1294 | 0 | Receptor of 11-nt loop-receptor motif | A | ai5g group II Self-splicing intron | C | 15 | U | 16 | A | 17 | A | 18 | G | 19 | * | U | 54 | A | 55 | U | 56 | G | 57 | cWW | tWH | cSH | cWW | |
3 | IL_1GID_007 | 1GID | 0.0000 | 0 | A | P4-P6 RNA RIBOZYME DOMAIN | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | * | U | 247 | A | 248 | U | 249 | G | 250 | cWW | tWH | cSH | ncWW | cWW | |
4 | IL_1GID_014 | 1GID | 0.0114 | 0 | B | P4-P6 RNA RIBOZYME DOMAIN | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | * | U | 247 | A | 248 | U | 249 | G | 250 | cWW | tWH | cSH | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUAAG*UAUG | 4 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAA*AU | 4 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_82768.1 | Only in the child motif |
---|---|---|---|
IL_82768.2 Compare | IL_1GID_007, IL_1GID_014, IL_3G78_014, IL_1KXK_002 | IL_1NBS_008, IL_1U6B_003 |
- Annotations
-
- (3)
- Receptor of 11-nt loop-receptor motif (1)
- Basepair signature
- Heat map statistics
- Min 0.01 | Avg 0.15 | Max 0.31
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