IL_83039.5

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_3IWN_003	3IWN	0.5894	1	Major groove intercalation	A	C-di-GMP riboswitch	G	81	G	82	*	C	42	C	44	cWW	cWW
2	IL_3MXH_003	3MXH	0.5257	1	Major groove intercalation	R	c-di-GMP riboswitch	G	86	G	87	*	C	52	C	54	cWW	cWW
3	IL_1MJI_003	1MJI	0.4169	2	Multiple bulged bases	D	5S rRNA fragment	C	30	C	31	*	G	51	G	54	cWW	cWW
4	IL_1ET4_002	1ET4	0.4012	1	Major groove intercalation	A	RNA APTAMER, 35-MER	C	218	C	219	*	G	226	G	228	cWW	cWW
5	IL_5TBW_131	5TBW	0.6673	1	Single bulged U	1	LSU rRNA	C	3324	G	3325	*	U	3381	G	3383	cWW	cWW
6	IL_5LYS_008	5LYS	0.5671	1	Single bulged U	B	7SK RNA	C	45	G	46	*	C	62	G	64	cWW	cWW
7	IL_5J7L_334	5J7L	0.4810	1	Single bulged U	DA	LSU rRNA	G	2414	G	2415	*	U	2401	C	2403	cWW	cWW
8	IL_4WF9_088	4WF9	0.4138	1	Single bulged U	X	LSU rRNA	G	2441	G	2442	*	U	2428	C	2430	cWW	cWW
9	IL_5TBW_086	5TBW	0.4525	1	Single bulged U	1	LSU rRNA	C	2237	G	2238	*	C	2204	G	2206	cWW	cWW
10	IL_4KZD_001	4KZD	0.3864	1	Single bulged U	R	RNA (84-MER)	C	10	G	11	*	C	74	G	76	cWW	cWW
11	IL_5J7L_017	5J7L	0.3465	1	Single bulged U	AA	SSU rRNA	C	392	A	393	*	U	367	G	369	cWW	cWW
12	IL_4V88_439	4V88	0.3067	1	Single bulged U	A6	SSU rRNA	C	1066	C	1067	*	G	1051	G	1053	cWW	cWW
13	IL_5TBW_032	5TBW	0.3432	1	Single bulged U	1	LSU rRNA	C	873	G	875	*	C	886	G	887	cWW	cWW
14	IL_4LFB_046	4LFB	0.3886	1	Single bulged U	A	SSU rRNA	C	1195	G	1197	*	C	1060	G	1061	cWW	cWW
15	IL_6CZR_156	6CZR	0.4332	1	Single bulged U	1a	SSU rRNA	C	1177	G	1179	*	C	1043	G	1044	cWW	cWW
16	IL_4V9F_039	4V9F	0.2333	1	Single bulged U	0	LSU rRNA	G	1108	G	1110	*	C	1253	C	1254	cWW	cWW
17	IL_397D_001	397D	0.2090	3	Multiple bulged bases	A+B	RNA (15-mer) + RNA (12-mer)	A	22	G	26	*	C	39	U	40	cWW	cWW
18	IL_1S03_005	1S03	0.2041	1	Single bulged U	B	47-MER	A	6	G	8	*	C	41	U	42	cWW	cWW
19	IL_4Y4O_253	4Y4O	0.1843	1	Single bulged U	2A	LSU rRNA	G	2067	G	2069	*	C	2442	C	2443	cWW	cWW
20	IL_4IOA_075	4IOA	0.2507	1	Single bulged U	X	LSU rRNA	G	2050	G	2052	*	C	2421	C	2422	cWW	cWW
21	IL_4WF9_080	4WF9	0.2305	1	Single bulged U	X	LSU rRNA	G	2094	G	2096	*	C	2469	C	2470	cWW	cWW
22	IL_4V9F_074	4V9F	0.2769	1	Single bulged U	0	LSU rRNA	A	2108	G	2110	*	C	2477	U	2478	cWW	cWW
23	IL_3NDB_005	3NDB	0.3008	1	Single bulged U	M	SRP RNA	G	237	G	238	*	C	139	C	141	cWW	cWW
24	IL_4FRG_002	4FRG	0.2513	1	Single bulged U	B	cobalamin riboswitch aptamer domain	G	23	G	25	*	C	39	C	40	cWW	cWW
25	IL_3TZR_002	3TZR	0.3037	1	Single bulged U	B+A	RNA (16-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
26	IL_3MEI_001	3MEI	0.3434	1	Single bulged U	A+B	RNA (23-mer)	C	7	G	8	*	C	15	G	17	cWW	cWW
27	IL_2ZY6_002	2ZY6	0.3060	1	Single bulged U	A	phenylalanyl transfer RNA	C	24	C	25	*	G	10	G	12	cWW	cWW
28	IL_5TBW_053	5TBW	0.3114	1	Single bulged U	1	LSU rRNA	C	1296	C	1297	*	G	1207	G	1209	cWW	cWW
29	IL_2A64_003	2A64	0.1954	1	Single bulged U	A	ribonuclease P RNA	C	77	C	78	*	G	66	G	68	cWW	cWW
30	IL_5J7L_046	5J7L	0.1896	1	Single bulged U	AA	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
31	IL_3W3S_005	3W3S	0.2251	1	Single bulged U	B	Selenocysteine transfer RNA	C	26\|\|\|\|43_455	C	27\|\|\|\|43_455	*	G	43\|\|\|\|43_455	G	44\|\|\|\|43_455	cWW	cWW
32	IL_3W3S_002	3W3S	0.2251	1	Single bulged U	B	Selenocysteine transfer RNA	C	26	C	27	*	G	43	G	44	cWW	cWW
33	IL_2PN3_003	2PN3	0.2541	1	Single bulged U	A+B	RNA (24-mer) + RNA (20-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
34	IL_5TBW_134	5TBW	0.2644	1	Single bulged U	1	LSU rRNA	U	3363	C	3364	*	G	3340	A	3342	cWW	cWW
35	IL_4V88_449	4V88	0.2465	1	Single bulged U	A6	SSU rRNA	C	1440	C	1441	*	G	1268	G	1270	cWW	cWW
36	IL_4V9F_107	4V9F	0.2357	1	Single bulged U	9	5S rRNA	C	95	C	96	*	G	86	G	88	cWW	cWW
37	IL_4LFB_042	4LFB	0.2280	1	Single bulged U	A	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
38	IL_4V88_407	4V88	0.1742	1	Single bulged U	A6	SSU rRNA	U	463	A	464	*	U	439	A	441	cWW	cWW
39	IL_6CZR_126	6CZR	0.2327	1	Single bulged U	1a	SSU rRNA	G	388	A	389	*	U	363	C	365	cWW	cWW
40	IL_2UWM_003	2UWM	0.2313	1	Single bulged U	D	RNA (23-mer)	C	25	G	27	*	C	21	G	22	cWW	cWW
41	IL_3D2V_001	3D2V	0.1701	1	Single bulged U	A	TPP riboswitch (THI element)	C	5	C	6	*	G	73	G	75	cWW	cWW
42	IL_3WBM_001	3WBM	0.2074	1	Single bulged U	Y+X	RNA (25-MER)	U	23	C	24	*	G	2	A	4	cWW	cWW
43	IL_5TBW_093	5TBW	0.1451	1	Single bulged U	1	LSU rRNA	G	2409	U	2411	*	A	2811	C	2812	cWW	cWW
44	IL_4V9F_029	4V9F	0.1588	1	Single bulged U	0	LSU rRNA	G	834	G	836	*	C	847	C	848	cWW	cWW
45	IL_4LFB_014	4LFB	0.0000	1	Single bulged U	A	SSU rRNA	G	392	A	393	*	U	367	C	369	cWW	cWW
46	IL_4IOA_034	4IOA	0.1629	1	Single bulged U	X	LSU rRNA	A	1022	G	1024	*	C	1160	U	1161	cWW	cWW
47	IL_1S03_001	1S03	0.3524	1	Single bulged U	A	47-MER	A	6	G	8	*	C	41	U	42	cWW	cWW
48	IL_5TBW_125	5TBW	0.3077	1	Single bulged U	1	LSU rRNA	G	3197	G	3199	*	C	3193	C	3194	cWW	cWW
49	IL_5TBW_050	5TBW	0.2763	1	Single bulged U	1	LSU rRNA	A	1180	A	1182	*	U	1324	U	1325	cWW	cWW
50	IL_4V88_401	4V88	0.3402	1	Single bulged U	A6	SSU rRNA	G	279	G	281	*	C	275	C	276	cWW	cWW
51	IL_5TBW_130	5TBW	0.2954	1	Single bulged U	1	LSU rRNA	G	3318	A	3320	*	U	3387	C	3388	ncWW	cWW
52	IL_5TBW_089	5TBW	0.3045	2	Bulged stacked bases	1	LSU rRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
53	IL_5J7L_318	5J7L	0.2141	2	Bulged stacked bases	DA	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
54	IL_4IOA_071	4IOA	0.1792	2		X	LSU rRNA	G	1916	C	1917	*	G	1947	C	1950	cWW	cWW
55	IL_5TBW_003	5TBW	0.2051	1	Single bulged U	1+4	LSU rRNA + 5.8S rRNA	A	13	C	15	*	G	144	U	145	cWW	cWW
56	IL_4WF9_038	4WF9	0.1992	1	Single bulged U	X	LSU rRNA	A	1055	A	1057	*	U	1193	U	1194	cWW	cWW
57	IL_2OIU_003	2OIU	0.2693	1	Single bulged U	Q	L1 Ribozyme RNA Ligase	A	41	C	42	*	G	18	U	20	cWW	cWW
58	IL_2PJP_001	2PJP	0.2762	1	Single bulged U	B	SECIS RNA	A	29	C	30	*	G	16	U	18	cWW	cWW
59	IL_5TBW_012	5TBW	0.2724	1	Single bulged U	1	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
60	IL_4V9F_013	4V9F	0.2087	1	Single bulged U	0	LSU rRNA	G	322	C	323	*	G	307	C	309	cWW	cWW
61	IL_4V88_414	4V88	0.2676	1	Single bulged U	A6	SSU rRNA	G	586	C	587	*	G	557	C	559	cWW	cWW
62	IL_5TBW_146	5TBW	0.3082	1	Single bulged U	4	5.8S rRNA	G	68	U	69	*	A	89	C	91	cWW	cWW
63	IL_4Y4O_215	4Y4O	0.3685	1	Single bulged U	2A	LSU rRNA	G	1011	C	1013	*	G	1149	C	1150	cWW	cWW
64	IL_5J7L_279	5J7L	0.3735	1	Single bulged U	DA	LSU rRNA	G	1011	C	1013	*	G	1149	C	1150	cWW	cWW
65	IL_5J7L_298	5J7L	0.4363	1	Single bulged U	DA	LSU rRNA	G	1459	C	1461	*	G	1450	C	1451	cWW	cWW
66	IL_4C7O_001	4C7O	0.4103	1	Single bulged U	E	SRP RNA	G	38	A	40	*	U	7	C	8	cWW	cWW
67	IL_4WF9_030	4WF9	0.4013	1	Single bulged U	X	LSU rRNA	A	897	U	898	*	A	969	U	971	cWW	cWW
68	IL_4O26_001	4O26	0.3834	1	Single bulged U	E	Telomerase TR	G	193	C	194	*	G	181	C	183	cWW	cWW
69	IL_6JQ6_006	6JQ6	0.3970	1	Single bulged U	U	RNA (81-MER)	G	55	U	56	*	A	38	C	40	cWW	cWW
70	IL_6JQ6_003	6JQ6	0.3970	1	Single bulged U	U	RNA (81-MER)	G	55\|\|\|\|11_555	U	56\|\|\|\|11_555	*	A	38\|\|\|\|11_555	C	40\|\|\|\|11_555	cWW	cWW
71	IL_6JQ5_003	6JQ5	0.3871	1	Single bulged U	A	RNA (82-MER)	G	55	U	56	*	A	38	C	40	cWW	cWW
72	IL_6JQ5_006	6JQ5	0.4074	1	Single bulged U	B	RNA (82-MER)	G	55	U	56	*	A	38	C	40	cWW	cWW
73	IL_2A64_002	2A64	0.3675	1	Single bulged U	A	ribonuclease P RNA	G	395	C	396	*	G	51	C	53	cWW	cWW
74	IL_2R8S_004	2R8S	0.3074	1	Single bulged U	R	P4-P6 RNA RIBOZYME DOMAIN	A	192	C	193	*	G	129	U	131	cWW	cWW
75	IL_6MWN_006	6MWN	0.3005	1	Single bulged U	B	IRES	G	646	A	647	*	U	659	C	661	cWW	cWW
76	IL_5TBW_025	5TBW	0.1840	1	Single bulged U	1	LSU rRNA	A	755	U	756	*	A	775	U	777	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GUG	12
GUG*CC	8
GU*AUC	5
CG*CUG	4
CUG*CG	4
AUG*CU	4
AC*GUU	4
GC*GUC	4
GG*CUC	3
GA*UUC	3
GUC*GC	3
GG*UUC	2
UC*GUA	2
AUA*UU	2
GUA*UC	2
GC*GCAC	2
AU*AUU	2
CC*GAAG	1
CG*UUG	1
CA*UUG	1
AUCUG*CU	1
GUG*UC	1
UC*GUG	1
UA*UUA	1
GUU*AC	1
GC*GCAU	1
AUC*GU	1

Non-Watson-Crick part of the motif

Sequence	Counts
*U	45
U*	26
*CA	3
*AA	1
UCU*	1

Release history

Release	3.22	3.23	3.24
Date	2019-08-23	2019-09-19	2019-10-16
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_83039.5 Version IL_83039.5 of this group appears in releases 3.22 to 3.24 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_83039.5 Version IL_83039.5 of this group appears in releases 3.22 to 3.24

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Csv

Json