Motif IL_85010.2 Version IL_85010.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6	1-6	3-4	3-5	4-5
1	IL_4TZZ_009	4TZZ	0.7957	0		F	T-box leader	G	28	A	29	U	30	U	31	*	A	77	C	78	ncWW			cWW
2	IL_4TZZ_004	4TZZ	0.7612	0		C	T-box leader	G	28	A	29	U	30	U	31	*	A	77	C	78	ncWW			ncWW
3	IL_3J7A_046	3J7A	0.1961	1		A	SSU rRNA	G	1054	G	1055	G	1056	G	1058	*	U	1084	C	1085	cWW		ntSH	cWW
4	IL_2AW7_039	2AW7	0.0000	1		A	16S ribosomal RNA	G	774	G	775	G	776	G	778	*	U	804	C	805	cWW			cWW
5	IL_4FNJ_003	4FNJ	0.6294	0		A	RNA (35-MER)	C	8	U	9	A	10	A	11	*	U	27	G	28	cWW	cSH		cWW
6	IL_1U6B_009	1U6B	0.6549	0	Major groove platform with intercalated tWH	B	197-MER	C	147	U	148	A	149	A	150	*	U	162	G	163	cWW	cSH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUU*AC	2
GGGAG*UC	2
CUAA*UG	2

Non-Watson-Crick part of the motif

Sequence	Counts
AU*	2
GGA*	2
UA*	2

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_85010.2	Only in the parent motif
IL_85010.1 Compare	IL_2AW7_039, IL_1U6B_009, IL_3J7A_046, IL_4FNJ_003	IL_4TZZ_004, IL_4TZZ_009	IL_4LCK_003

Children motifs

This motif has no children motifs.

Annotations: (5)
Major groove platform with intercalated tWH (1)
Basepair signature: cWW-L-cSH-cWW
Heat map statistics: Min 0.12 | Avg 0.54 | Max 0.89

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view

reading 481 atoms

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2 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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481 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 79 ms

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Coloring options: Nucleotide numbers

Motif IL_85010.2 Version IL_85010.2 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_85010.2 Version IL_85010.2 of this group appears in releases 1.18 to 1.18

Download

Csv

Json