Motif IL_85010.1 Version IL_85010.1 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6	1-6	3-4	3-5	4-5
1	IL_4LCK_003	4LCK	0.6865	0		C	T-box leader	G	28	A	29	U	30	U	31	*	A	77	C	78	cWW			cWW
2	IL_3J7A_046	3J7A	0.1961	1		A	SSU rRNA	G	1054	G	1055	G	1056	G	1058	*	U	1084	C	1085	cWW		ntSH	cWW
3	IL_2AW7_039	2AW7	0.0000	1		A	16S ribosomal RNA	G	774	G	775	G	776	G	778	*	U	804	C	805	cWW			cWW
4	IL_4FNJ_003	4FNJ	0.6294	0		A	RNA (35-MER)	C	8	U	9	A	10	A	11	*	U	27	G	28	cWW	cSH		cWW
5	IL_1U6B_009	1U6B	0.6549	0	Major groove platform with intercalated tWH	B	197-MER	C	147	U	148	A	149	A	150	*	U	162	G	163	cWW	cSH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGGAG*UC	2
CUAA*UG	2
GAUU*AC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGA*	2
UA*	2
AU*	1

Release history

Release	1.17
Date	2014-09-04
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_85010.1	Only in the parent motif
IL_49668.1 Compare	IL_4FNJ_003, IL_1U6B_009	IL_2AW7_039, IL_3J7A_046, IL_4LCK_003	IL_3U5H_132, IL_4CUV_138
IL_11751.1 Compare	IL_2AW7_039	IL_4LCK_003, IL_4FNJ_003, IL_3J7A_046, IL_1U6B_009	IL_1FJG_032
IL_46648.8 Compare	IL_4LCK_003	IL_2AW7_039, IL_4FNJ_003, IL_3J7A_046, IL_1U6B_009	IL_1VW3_081, IL_4NVV_095, IL_2QBG_098, IL_4A1B_114, IL_4CUV_077, IL_4KQY_004, IL_4C7O_002, IL_3U5H_078, IL_1S72_087, IL_3WBM_004, IL_3U5H_117, IL_4CUV_121, IL_4IOA_093, IL_2QWY_005, IL_4A1B_069

Children motifs

Child motif	Common motif instances	Only in IL_85010.1	Only in the child motif
IL_85010.2 Compare	IL_2AW7_039, IL_1U6B_009, IL_3J7A_046, IL_4FNJ_003	IL_4LCK_003	IL_4TZZ_004, IL_4TZZ_009

Annotations: (4)
Major groove platform with intercalated tWH (1)
Basepair signature: cWW-L-cSH-cWW
Heat map statistics: Min 0.12 | Avg 0.47 | Max 0.76

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Coloring options: Nucleotide numbers

Motif IL_85010.1 Version IL_85010.1 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_85010.1 Version IL_85010.1 of this group appears in releases 1.17 to 1.17

Download

Csv

Json