Motif IL_85010.1 Version IL_85010.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 3-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LCK_003 | 4LCK | 0.6865 | 0 | C | T-box leader | G | 28 | A | 29 | U | 30 | U | 31 | * | A | 77 | C | 78 | cWW | cWW | |||
| 2 | IL_3J7A_046 | 3J7A | 0.1961 | 1 | A | SSU rRNA | G | 1054 | G | 1055 | G | 1056 | G | 1058 | * | U | 1084 | C | 1085 | cWW | ntSH | cWW | ||
| 3 | IL_2AW7_039 | 2AW7 | 0.0000 | 1 | A | SSU rRNA | G | 774 | G | 775 | G | 776 | G | 778 | * | U | 804 | C | 805 | cWW | cWW | |||
| 4 | IL_4FNJ_003 | 4FNJ | 0.6294 | 0 | A | RNA (35-MER) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 27 | G | 28 | cWW | cSH | cWW | ||
| 5 | IL_1U6B_009 | 1U6B | 0.6549 | 0 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 149 | A | 150 | * | U | 162 | G | 163 | cWW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAG*UC | 2 |
| CUAA*UG | 2 |
| GAUU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA* | 2 |
| UA* | 2 |
| AU* | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_85010.1 | Only in the parent motif |
|---|---|---|---|
| IL_49668.1 Compare | IL_4FNJ_003, IL_1U6B_009 | IL_2AW7_039, IL_3J7A_046, IL_4LCK_003 | IL_3U5H_132, IL_4CUV_138 |
| IL_11751.1 Compare | IL_2AW7_039 | IL_4LCK_003, IL_4FNJ_003, IL_3J7A_046, IL_1U6B_009 | IL_1FJG_032 |
| IL_46648.8 Compare | IL_4LCK_003 | IL_2AW7_039, IL_4FNJ_003, IL_3J7A_046, IL_1U6B_009 | IL_1VW3_081, IL_4NVV_095, IL_2QBG_098, IL_4A1B_114, IL_4CUV_077, IL_4KQY_004, IL_4C7O_002, IL_3U5H_078, IL_1S72_087, IL_3WBM_004, IL_3U5H_117, IL_4CUV_121, IL_4IOA_093, IL_2QWY_005, IL_4A1B_069 |
Children motifs
| Child motif | Common motif instances | Only in IL_85010.1 | Only in the child motif |
|---|---|---|---|
| IL_85010.2 Compare | IL_2AW7_039, IL_1U6B_009, IL_3J7A_046, IL_4FNJ_003 | IL_4LCK_003 | IL_4TZZ_004, IL_4TZZ_009 |
- Annotations
-
- (4)
- Major groove platform with intercalated tWH (1)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.47 | Max 0.76
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