Motif IL_85402.1 Version IL_85402.1 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNR_008 | 3BNR | 0.4315 | 0 | Minor groove platform related | C+D | A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 13 | C | 14 | A | 15 | A | 16 | G | 17 | cWW | cwW | ncwW | cWW |
| 2 | IL_3LOA_001 | 3LOA | 0.3815 | 0 | UAA/GAN variation | A+B | RNA (21-mer) + RNA (23-mer) | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | ncWW | cWW | |
| 3 | IL_4LFB_008 | 4LFB | 0.0000 | 0 | A | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | cWW | cWw | cWW | ||
| 4 | IL_5J7L_010 | 5J7L | 0.1041 | 0 | Minor groove platform related | AA | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | cWW | cWw | cWW | |
| 5 | IL_5J7L_353 | 5J7L | 0.7088 | 0 | Multiple bulged bases with non-canonical cWW | DA | LSU rRNA | G | 2843 | G | 2844 | U | 2845 | G | 2846 | * | C | 2870 | U | 2871 | A | 2872 | A | 2873 | C | 2874 | cWW | cWw | cWW | |
| 6 | IL_1NUV_003 | 1NUV | 0.7978 | 1 | F+E | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACC*GCAAG | 1 |
| GCCC*GUAAC | 1 |
| GAUG*CUACC | 1 |
| GAUG*CUGCC | 1 |
| GGUG*CUAAC | 1 |
| GGAG*CCGAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*CAA | 1 |
| CC*UAA | 1 |
| AU*UAC | 1 |
| AU*UGC | 1 |
| GU*UAA | 1 |
| GA*CGAG | 1 |
- Annotations
-
- (2)
- Minor groove platform related (2)
- UAA/GAN variation (1)
- Multiple bulged bases with non-canonical cWW (1)
- Basepair signature
- cWW-L-R-R-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.53 | Max 0.96
Coloring options: