Motif IL_85666.1 Version IL_85666.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6LTU_001 | 6LTU | 0.6417 | 2 | B | RNA (56-mer) | A | 16 | G | 19 | * | C | 11 | U | 12 | cWW | cWW | |
| 2 | IL_6JXM_001 | 6JXM | 0.4743 | 2 | Multiple bulged bases | B | tRNA | A | 34 | C | 35 | * | G | 53 | U | 56 | cWW | cWW |
| 3 | IL_4WF9_098 | 4WF9 | 0.3797 | 1 | Single bulged A | X | LSU rRNA | C | 2618 | G | 2619 | * | C | 2628 | G | 2630 | cWW | |
| 4 | IL_4WF9_071 | 4WF9 | 0.0000 | 2 | Major groove outside cWW, minor groove, intercalation pocket | X | LSU rRNA | U | 1868 | G | 1869 | * | U | 1925 | A | 1928 | cWW | cWW |
| 5 | IL_4R4V_001 | 4R4V | 0.1866 | 1 | Minor groove platform | A | VS ribozyme RNA | U | 607 | G | 608 | * | U | 777 | A | 779 | cWW | cWW |
| 6 | IL_8T29_003 | 8T29 | 0.3799 | 1 | R | RNA (90-MER) | U | 65 | G | 66 | * | C | 54 | A | 56 | cWW | cWW | |
| 7 | IL_6JQ5_002 | 6JQ5 | 0.6566 | 2 | Multiple bulged bases | A | RNA (82-MER) | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 8 | IL_6JQ5_005 | 6JQ5 | 0.6761 | 2 | Multiple bulged bases | B | RNA (82-MER) | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 9 | IL_6JQ6_005 | 6JQ6 | 0.6833 | 2 | Multiple bulged bases | U | RNA (81-MER) | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUA*UUA | 3 |
| AUUG*CU | 1 |
| AC*GAUU | 1 |
| CG*CAG | 1 |
| UG*UAAA | 1 |
| UG*UUA | 1 |
| UG*CAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 3 |
| *A | 2 |
| UU* | 1 |
| *AU | 1 |
| *AA | 1 |
| *U | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (4)
- (2)
- Minor groove platform (1)
- Major groove outside cWW, minor groove, intercalation pocket (1)
- Single bulged A (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.48 | Max 0.78
Coloring options: