Motif IL_86802.1 Version IL_86802.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5CNR_002 | 5CNR | 0.0933 | 1 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | G | 40 | cWW | cWW |
| 2 | IL_4P97_002 | 4P97 | 0.0000 | 1 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | G | 40 | cWW | cWW |
| 3 | IL_4Y4O_276 | 4Y4O | 0.2146 | 1 | 2A | LSU rRNA | C | 2591 | G | 2592 | * | C | 2601 | G | 2603 | cWW | cWW | |
| 4 | IL_4V88_469 | 4V88 | 0.9118 | 1 | Single bulged U | A6 | SSU rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GAG | 2 |
| CG*CAG | 1 |
| UA*UUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 3 |
| *U | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged A (2)
- Single bulged U (1)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.39 | Max 0.91
Coloring options: