Motif IL_87332.2 Version IL_87332.2 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-2 | 1-7 | 2-7 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4N0T_004 | 4N0T | 0.9781 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW | |||
| 2 | IL_4V9F_053 | 4V9F | 0.9622 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW | ||||
| 3 | IL_4P3T_002 | 4P3T | 0.8991 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | C | 8 | C | 9 | cWW | ncWW | cWW | ||||
| 4 | IL_7RQB_031 | 7RQB | 0.8697 | 0 | Minor groove platform with extra cWW | 1A | LSU rRNA | A | 899 | A | 900 | A | 901 | C | 902 | * | G | 875 | C | 876 | U | 877 | cWW | tHS | ncWW | cWW | ||
| 5 | IL_4V88_411 | 4V88 | 0.7925 | 0 | Minor groove platform with extra cWW | A6 | SSU rRNA | U | 533 | A | 534 | A | 535 | C | 536 | * | G | 516 | U | 517 | A | 518 | cWW | tHS | ncWW | cWW | ||
| 6 | IL_5J7L_006 | 5J7L | 0.7685 | 0 | Minor groove platform with extra cWW | AA | SSU rRNA | C | 99 | G | 100 | A | 101 | G | 102 | * | C | 67 | G | 68 | G | 69 | cWW | tHS | cWW | cWW | ||
| 7 | IL_4WF9_003 | 4WF9 | 0.5623 | 0 | Minor groove platform with extra cWW | X | LSU rRNA | U | 480 | C | 481 | U | 482 | C | 483 | * | G | 42 | A | 43 | A | 44 | cSH | cWW | cWW | |||
| 8 | IL_3MXH_001 | 3MXH | 0.0000 | 1 | Minor groove platform with extra cWW | R | c-di-GMP riboswitch | G | 94 | A | 95 | G | 97 | G | 98 | * | C | 11 | A | 12 | C | 13 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUG*CCC | 1 |
| GACU*ACC | 1 |
| GAAG*CCC | 1 |
| AAAC*GCU | 1 |
| UAAC*GUA | 1 |
| CGAG*CGG | 1 |
| UCUC*GAA | 1 |
| GAUGG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*C | 2 |
| AU*C | 1 |
| AC*C | 1 |
| AA*U | 1 |
| GA*G | 1 |
| CU*A | 1 |
| AUG*A | 1 |
- Annotations
-
- Minor groove platform with extra cWW (5)
- (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.48 | Max 0.98
Coloring options: