Motif IL_87336.1 Version IL_87336.1 of this group appears in releases 0.9 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-6 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_123 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | U | 3047 | A | 3048 | A | 3049 | U | 3050 | U | 3051 | * | A | 3091 | C | 3093 | A | 3094 | cWW | tHH | cWW | |
| 2 | IL_4A1B_119 | 4A1B | 0.3495 | 1 | 1 | 26S RRNA | U | 3036 | A | 3037 | A | 3038 | U | 3039 | U | 3040 | * | A | 3080 | C | 3082 | A | 3083 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAUU*ACCA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU*CC | 2 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87336.1 | Only in the parent motif |
|---|---|---|---|
| IL_98421.1 Compare | IL_3U5H_123 | IL_4A1B_119 | IL_1FJG_013, IL_2AW7_016 |
| IL_96260.1 Compare | IL_4A1B_119 | IL_3U5H_123 |
Children motifs
| Child motif | Common motif instances | Only in IL_87336.1 | Only in the child motif |
|---|---|---|---|
| IL_34868.1 Compare | IL_4A1B_119 | IL_3U5H_123 | |
| IL_98421.3 Compare | IL_3U5H_123 | IL_4A1B_119 | IL_1FJG_013, IL_2AW7_016 |
- Annotations
- Basepair signature
- cWW-L-R-L-L-cWW
- Heat map statistics
- Min 0.35 | Avg 0.17 | Max 0.35
Coloring options: