Motif IL_98421.1 Version IL_98421.1 of this group appears in releases 0.6 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-4 | 1-7 | 2-3 | 2-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_123 | 3U5H | 0.7839 | 2 | 5 | 25S rRNA | A | 3091 | A | 3094 | * | U | 3047 | A | 3048 | A | 3049 | U | 3050 | U | 3051 | tHH | cWW | cWW | ||
| 2 | IL_1FJG_013 | 1FJG | 0.0000 | 0 | C-loop (H) | A | SSU rRNA | G | 292 | G | 293 | * | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | cWW | cWW | ntSH | |
| 3 | IL_2AW7_016 | 2AW7 | 0.3565 | 0 | A | 16S ribosomal RNA | G | 292 | G | 293 | * | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCA*UAAUU | 1 |
| GG*UGGCC | 1 |
| GG*UGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*AAU | 1 |
| *GGC | 1 |
| *GAC | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_98421.1 | Only in the parent motif |
|---|---|---|---|
| IL_61831.1 Compare | IL_2AW7_016 | IL_1FJG_013, IL_3U5H_123 | IL_2ZJR_092, IL_1S72_087, IL_3PYO_087, IL_2QBG_098 |
| IL_56765.1 Compare | IL_1FJG_013 | IL_2AW7_016, IL_3U5H_123 | IL_2QBZ_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_98421.1 | Only in the child motif |
|---|---|---|---|
| IL_98421.2 Compare | IL_1FJG_013, IL_2AW7_016 | IL_3U5H_123 | IL_2XZM_022 |
| IL_87336.1 Compare | IL_3U5H_123 | IL_1FJG_013, IL_2AW7_016 | IL_4A1B_119 |
- Annotations
-
- (2)
- C-loop (H) (1)
- Basepair signature
- cWW-R-R-R-cWW
- Heat map statistics
- Min 0.36 | Avg 0.43 | Max 0.80
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