Motif IL_87630.1 Version IL_87630.1 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7	1-7	2-6	3-4	3-5	3-6	4-5
1	IL_5TBW_064	5TBW	0.4935	0	Other IL	1	LSU rRNA	G	1618	A	1619	U	1620	A	1621	*	U	1824	G	1825	C	1826	cWW	ncWW			cSW	cWW
2	IL_4Y4O_268	4Y4O	0.2824	0		2A	LSU rRNA	C	2456	U	2457	G	2458	A	2459	*	U	2493	G	2494	G	2495	cWW	ncWW		ntSH		cWW
3	IL_4KQY_003	4KQY	0.1635	0	Major groove platform with extra pair	A	SAM-I riboswitch	C	45	A	46	A	47	C	48	*	G	77	U	78	G	79	cWW	ntSH	cSH			cWW
4	IL_4KQY_008	4KQY	0.1635	0	Major groove platform with extra pair	A	SAM-I riboswitch	C	45\|\|\|\|4_555	A	46\|\|\|\|4_555	A	47\|\|\|\|4_555	C	48\|\|\|\|4_555	*	G	77\|\|\|\|4_555	U	78\|\|\|\|4_555	G	79\|\|\|\|4_555	cWW	ntSH	cSH			cWW
5	IL_4AOB_003	4AOB	0.1001	0	Major groove platform with extra pair	A	SAM-I riboswitch	C	44	A	45	A	46	C	47	*	G	56	U	57	G	58	cWW	tSH	ncSH			cWW
6	IL_4AOB_008	4AOB	0.1001	0	Major groove platform with extra pair	A	SAM-I riboswitch	C	44\|\|\|\|7_555	A	45\|\|\|\|7_555	A	46\|\|\|\|7_555	C	47\|\|\|\|7_555	*	G	56\|\|\|\|7_555	U	57\|\|\|\|7_555	G	58\|\|\|\|7_555	cWW	tSH	ncSH			cWW
7	IL_4OQU_001	4OQU	0.0718	0	Major groove platform with extra pair	A	SAM-I/IV riboswitch	C	24	A	25	A	26	C	27	*	G	46	U	47	G	48	cWW	tSH	cSH			cWW
8	IL_5FJC_003	5FJC	0.0000	0	Major groove platform with extra pair	A	SAM-I riboswitch	C	44	A	45	A	46	C	47	*	G	56	U	57	G	58	cWW	tSH	cSH			cWW
9	IL_2YGH_007	2YGH	0.0896	0		A	SAM-I riboswitch	C	44\|\|\|\|8_554	A	45\|\|\|\|8_554	A	46\|\|\|\|8_554	C	47\|\|\|\|8_554	*	G	56\|\|\|\|8_554	U	57\|\|\|\|8_554	G	58\|\|\|\|8_554	cWW	tSH	cSH			cWW
10	IL_2YGH_003	2YGH	0.0896	0	Major groove platform with extra pair (H)	A	SAM-I riboswitch	C	44	A	45	A	46	C	47	*	G	56	U	57	G	58	cWW	tSH	cSH			cWW
11	IL_3V7E_003	3V7E	0.1163	0	Major groove platform with extra pair	C	SAM-I riboswitch	C	44	A	45	A	46	C	47	*	G	88	U	89	G	90	cWW	tSH	ncSH			cWW
12	IL_4V8P_251	4V8P	0.4579	0	Major groove platform with extra pair (H)	D1	LSU rRNA	G	2386	C	2387	G	2388	G	2389	*	U	2974	A	2975	C	2976	cWW	cWW	cSH			cWW
13	IL_5TBW_091	5TBW	0.4432	0	Major groove platform with extra pair	1	LSU rRNA	G	2391	C	2392	G	2393	G	2394	*	U	2986	A	2987	C	2988	cWW	cWW	cSH			cWW
14	IL_5TBW_011	5TBW	0.4756	1	Major groove platform with extra pair	1	LSU rRNA	G	237	A	238	G	239	G	241	*	U	177	U	178	C	179	cWW	cWW	cSH			cWW
15	IL_5TBW_087	5TBW	0.6426	1	Major groove platform with extra pair	1	LSU rRNA	G	2206	A	2207	A	2208	G	2210	*	C	2235	G	2236	C	2237	cWW					cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAC*GUG	9
GCGG*UAC	2
GAUA*UGC	1
CUGA*UGG	1
GAGUG*UUC	1
GAAUG*CGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*U	9
CG*A	2
AU*G	1
UG*G	1
AGU*U	1
AAU*G	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform with extra pair (10)
Major groove platform with extra pair (H) (2)
(2)
Other IL (1)
Basepair signature: cWW-tSH-cSH-cWW
Heat map statistics: Min 0.07 | Avg 0.34 | Max 0.66

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Coloring options: Nucleotide numbers

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