#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-63-43-53-64-5
1 IL_5TBW_0645TBW0.49350Other IL1 LSU rRNAG1618A1619U1620A1621*U1824G1825C1826cWWncWWcSWcWW
2 IL_4Y4O_2684Y4O0.282402A LSU rRNAC2456U2457G2458A2459*U2493G2494G2495cWWncWWntSHcWW
3 IL_4KQY_0034KQY0.16350Major groove platform with extra pairA SAM-I riboswitchC45A46A47C48*G77U78G79cWWntSHcSHcWW
4 IL_4KQY_0084KQY0.16350Major groove platform with extra pairA SAM-I riboswitchC45||||4_555A46||||4_555A47||||4_555C48||||4_555*G77||||4_555U78||||4_555G79||||4_555cWWntSHcSHcWW
5 IL_4AOB_0084AOB0.10010Major groove platform with extra pairA SAM-I riboswitchC44||||7_555A45||||7_555A46||||7_555C47||||7_555*G56||||7_555U57||||7_555G58||||7_555cWWtSHncSHcWW
6 IL_4AOB_0034AOB0.10010Major groove platform with extra pairA SAM-I riboswitchC44A45A46C47*G56U57G58cWWtSHncSHcWW
7 IL_5FJC_0035FJC0.00000Major groove platform with extra pairA SAM-I riboswitchC44A45A46C47*G56U57G58cWWtSHcSHcWW
8 IL_4OQU_0014OQU0.07180Major groove platform with extra pairASAM-I/IV riboswitchC24A25A26C27*G46U47G48cWWtSHcSHcWW
9 IL_3V7E_0033V7E0.11630Major groove platform with extra pairC SAM-I riboswitchC44A45A46C47*G88U89G90cWWtSHncSHcWW
10 IL_5TBW_0915TBW0.44320Major groove platform with extra pair1 LSU rRNAG2391C2392G2393G2394*U2986A2987C2988cWWcWWcSHcWW
11 IL_5TBW_0115TBW0.47561Major groove platform with extra pair1 LSU rRNAG237A238G239G241*U177U178C179cWWcWWcSHcWW
12 IL_5TBW_0875TBW0.64261Major groove platform with extra pair1 LSU rRNAG2206A2207A2208G2210*C2235G2236C2237cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAC*GUG7
GAUA*UGC1
CUGA*UGG1
GCGG*UAC1
GAGUG*UUC1
GAAUG*CGC1
Non-Watson-Crick part of the motif
SequenceCounts
AA*U7
AU*G1
UG*G1
CG*A1
AGU*U1
AAU*G1

Release history

Release3.463.473.483.493.503.513.523.53
Date2021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with extra pair (10)
  • (1)
  • Other IL (1)
  • Basepair signature
    cWW-tSH-cSH-cWW
    Heat map statistics
    Min 0.07 | Avg 0.35 | Max 0.66
    Help

    Coloring options:

    IL_5TBW_064:IL_5TBW_064 = 0IL_5TBW_064:IL_4Y4O_268 = 0.402IL_5TBW_064:IL_4KQY_003 = 0.4792IL_5TBW_064:IL_4KQY_008 = 0.4792IL_5TBW_064:IL_4AOB_008 = 0.508IL_5TBW_064:IL_4AOB_003 = 0.508IL_5TBW_064:IL_5FJC_003 = 0.4935IL_5TBW_064:IL_4OQU_001 = 0.4988IL_5TBW_064:IL_3V7E_003 = 0.4735IL_5TBW_064:IL_5TBW_091 = 0.6021IL_5TBW_064:IL_5TBW_011 = 0.5589IL_5TBW_064:IL_5TBW_087 = 0.661IL_4Y4O_268:IL_5TBW_064 = 0.402IL_4Y4O_268:IL_4Y4O_268 = 0IL_4Y4O_268:IL_4KQY_003 = 0.3286IL_4Y4O_268:IL_4KQY_008 = 0.3286IL_4Y4O_268:IL_4AOB_008 = 0.3096IL_4Y4O_268:IL_4AOB_003 = 0.3096IL_4Y4O_268:IL_5FJC_003 = 0.2824IL_4Y4O_268:IL_4OQU_001 = 0.2893IL_4Y4O_268:IL_3V7E_003 = 0.2797IL_4Y4O_268:IL_5TBW_091 = 0.4302IL_4Y4O_268:IL_5TBW_011 = 0.4033IL_4Y4O_268:IL_5TBW_087 = 0.6507IL_4KQY_003:IL_5TBW_064 = 0.4792IL_4KQY_003:IL_4Y4O_268 = 0.3286IL_4KQY_003:IL_4KQY_003 = 0IL_4KQY_003:IL_4KQY_008 = 0IL_4KQY_003:IL_4AOB_008 = 0.1723IL_4KQY_003:IL_4AOB_003 = 0.1723IL_4KQY_003:IL_5FJC_003 = 0.1635IL_4KQY_003:IL_4OQU_001 = 0.1652IL_4KQY_003:IL_3V7E_003 = 0.2115IL_4KQY_003:IL_5TBW_091 = 0.5525IL_4KQY_003:IL_5TBW_011 = 0.5525IL_4KQY_003:IL_5TBW_087 = 0.6628IL_4KQY_008:IL_5TBW_064 = 0.4792IL_4KQY_008:IL_4Y4O_268 = 0.3286IL_4KQY_008:IL_4KQY_003 = 0IL_4KQY_008:IL_4KQY_008 = 0IL_4KQY_008:IL_4AOB_008 = 0.1723IL_4KQY_008:IL_4AOB_003 = 0.1723IL_4KQY_008:IL_5FJC_003 = 0.1635IL_4KQY_008:IL_4OQU_001 = 0.1652IL_4KQY_008:IL_3V7E_003 = 0.2115IL_4KQY_008:IL_5TBW_091 = 0.5525IL_4KQY_008:IL_5TBW_011 = 0.5525IL_4KQY_008:IL_5TBW_087 = 0.6628IL_4AOB_008:IL_5TBW_064 = 0.508IL_4AOB_008:IL_4Y4O_268 = 0.3096IL_4AOB_008:IL_4KQY_003 = 0.1723IL_4AOB_008:IL_4KQY_008 = 0.1723IL_4AOB_008:IL_4AOB_008 = 0IL_4AOB_008:IL_4AOB_003 = 0IL_4AOB_008:IL_5FJC_003 = 0.1001IL_4AOB_008:IL_4OQU_001 = 0.1057IL_4AOB_008:IL_3V7E_003 = 0.1346IL_4AOB_008:IL_5TBW_091 = 0.4795IL_4AOB_008:IL_5TBW_011 = 0.4997IL_4AOB_008:IL_5TBW_087 = 0.6456IL_4AOB_003:IL_5TBW_064 = 0.508IL_4AOB_003:IL_4Y4O_268 = 0.3096IL_4AOB_003:IL_4KQY_003 = 0.1723IL_4AOB_003:IL_4KQY_008 = 0.1723IL_4AOB_003:IL_4AOB_008 = 0IL_4AOB_003:IL_4AOB_003 = 0IL_4AOB_003:IL_5FJC_003 = 0.1001IL_4AOB_003:IL_4OQU_001 = 0.1057IL_4AOB_003:IL_3V7E_003 = 0.1346IL_4AOB_003:IL_5TBW_091 = 0.4795IL_4AOB_003:IL_5TBW_011 = 0.4997IL_4AOB_003:IL_5TBW_087 = 0.6456IL_5FJC_003:IL_5TBW_064 = 0.4935IL_5FJC_003:IL_4Y4O_268 = 0.2824IL_5FJC_003:IL_4KQY_003 = 0.1635IL_5FJC_003:IL_4KQY_008 = 0.1635IL_5FJC_003:IL_4AOB_008 = 0.1001IL_5FJC_003:IL_4AOB_003 = 0.1001IL_5FJC_003:IL_5FJC_003 = 0IL_5FJC_003:IL_4OQU_001 = 0.0718IL_5FJC_003:IL_3V7E_003 = 0.1163IL_5FJC_003:IL_5TBW_091 = 0.4432IL_5FJC_003:IL_5TBW_011 = 0.4756IL_5FJC_003:IL_5TBW_087 = 0.6426IL_4OQU_001:IL_5TBW_064 = 0.4988IL_4OQU_001:IL_4Y4O_268 = 0.2893IL_4OQU_001:IL_4KQY_003 = 0.1652IL_4OQU_001:IL_4KQY_008 = 0.1652IL_4OQU_001:IL_4AOB_008 = 0.1057IL_4OQU_001:IL_4AOB_003 = 0.1057IL_4OQU_001:IL_5FJC_003 = 0.0718IL_4OQU_001:IL_4OQU_001 = 0IL_4OQU_001:IL_3V7E_003 = 0.1155IL_4OQU_001:IL_5TBW_091 = 0.4392IL_4OQU_001:IL_5TBW_011 = 0.4658IL_4OQU_001:IL_5TBW_087 = 0.6361IL_3V7E_003:IL_5TBW_064 = 0.4735IL_3V7E_003:IL_4Y4O_268 = 0.2797IL_3V7E_003:IL_4KQY_003 = 0.2115IL_3V7E_003:IL_4KQY_008 = 0.2115IL_3V7E_003:IL_4AOB_008 = 0.1346IL_3V7E_003:IL_4AOB_003 = 0.1346IL_3V7E_003:IL_5FJC_003 = 0.1163IL_3V7E_003:IL_4OQU_001 = 0.1155IL_3V7E_003:IL_3V7E_003 = 0IL_3V7E_003:IL_5TBW_091 = 0.4345IL_3V7E_003:IL_5TBW_011 = 0.4742IL_3V7E_003:IL_5TBW_087 = 0.6512IL_5TBW_091:IL_5TBW_064 = 0.6021IL_5TBW_091:IL_4Y4O_268 = 0.4302IL_5TBW_091:IL_4KQY_003 = 0.5525IL_5TBW_091:IL_4KQY_008 = 0.5525IL_5TBW_091:IL_4AOB_008 = 0.4795IL_5TBW_091:IL_4AOB_003 = 0.4795IL_5TBW_091:IL_5FJC_003 = 0.4432IL_5TBW_091:IL_4OQU_001 = 0.4392IL_5TBW_091:IL_3V7E_003 = 0.4345IL_5TBW_091:IL_5TBW_091 = 0IL_5TBW_091:IL_5TBW_011 = 0.2498IL_5TBW_091:IL_5TBW_087 = 0.6173IL_5TBW_011:IL_5TBW_064 = 0.5589IL_5TBW_011:IL_4Y4O_268 = 0.4033IL_5TBW_011:IL_4KQY_003 = 0.5525IL_5TBW_011:IL_4KQY_008 = 0.5525IL_5TBW_011:IL_4AOB_008 = 0.4997IL_5TBW_011:IL_4AOB_003 = 0.4997IL_5TBW_011:IL_5FJC_003 = 0.4756IL_5TBW_011:IL_4OQU_001 = 0.4658IL_5TBW_011:IL_3V7E_003 = 0.4742IL_5TBW_011:IL_5TBW_091 = 0.2498IL_5TBW_011:IL_5TBW_011 = 0IL_5TBW_011:IL_5TBW_087 = 0.567IL_5TBW_087:IL_5TBW_064 = 0.661IL_5TBW_087:IL_4Y4O_268 = 0.6507IL_5TBW_087:IL_4KQY_003 = 0.6628IL_5TBW_087:IL_4KQY_008 = 0.6628IL_5TBW_087:IL_4AOB_008 = 0.6456IL_5TBW_087:IL_4AOB_003 = 0.6456IL_5TBW_087:IL_5FJC_003 = 0.6426IL_5TBW_087:IL_4OQU_001 = 0.6361IL_5TBW_087:IL_3V7E_003 = 0.6512IL_5TBW_087:IL_5TBW_091 = 0.6173IL_5TBW_087:IL_5TBW_011 = 0.567IL_5TBW_087:IL_5TBW_087 = 0IL_5TBW_064IL_4Y4O_268IL_4KQY_003IL_4KQY_008IL_4AOB_008IL_4AOB_003IL_5FJC_003IL_4OQU_001IL_3V7E_003IL_5TBW_091IL_5TBW_011IL_5TBW_087Discrepancy0.000.100.200.300.400.500.60
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