Motif IL_87630.4 Version IL_87630.4 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_064 | 5TBW | 0.4988 | 0 | Other IL | 1 | LSU rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | ncWW | cSW | cWW | ||
| 2 | IL_7RQB_093 | 7RQB | 0.2904 | 0 | Major groove platform with extra pair | 1A | LSU rRNA | C | 2456 | U | 2457 | G | 2458 | A | 2459 | * | U | 2493 | G | 2494 | G | 2495 | cWW | ncWW | ntSH | cWW | ||
| 3 | IL_4KQY_003 | 4KQY | 0.1652 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | ntSH | cSH | cWW | ||
| 4 | IL_4KQY_008 | 4KQY | 0.1652 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45||||4_555 | A | 46||||4_555 | A | 47||||4_555 | C | 48||||4_555 | * | G | 77||||4_555 | U | 78||||4_555 | G | 79||||4_555 | cWW | ntSH | cSH | cWW | ||
| 5 | IL_4AOB_008 | 4AOB | 0.1057 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44||||7_555 | A | 45||||7_555 | A | 46||||7_555 | C | 47||||7_555 | * | G | 56||||7_555 | U | 57||||7_555 | G | 58||||7_555 | cWW | tSH | ncSH | cWW | ||
| 6 | IL_4AOB_003 | 4AOB | 0.1057 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | ncSH | cWW | ||
| 7 | IL_5FJC_003 | 5FJC | 0.0718 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | ||
| 8 | IL_4OQU_001 | 4OQU | 0.0000 | 0 | Major groove platform with extra pair | A | SAM-I/IV riboswitch | C | 24 | A | 25 | A | 26 | C | 27 | * | G | 46 | U | 47 | G | 48 | cWW | tSH | cSH | cWW | ||
| 9 | IL_3V7E_003 | 3V7E | 0.1155 | 0 | Major groove platform with extra pair | C | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 88 | U | 89 | G | 90 | cWW | tSH | ncSH | cWW | ||
| 10 | IL_5TBW_091 | 5TBW | 0.4392 | 0 | Major groove platform with extra pair | 1 | LSU rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW | ||
| 11 | IL_5TBW_011 | 5TBW | 0.4658 | 1 | Major groove platform with extra pair | 1 | LSU rRNA | G | 237 | A | 238 | G | 239 | G | 241 | * | U | 177 | U | 178 | C | 179 | cWW | cWW | cSH | cWW | ||
| 12 | IL_5TBW_087 | 5TBW | 0.6361 | 1 | Major groove platform with extra pair | 1 | LSU rRNA | G | 2206 | A | 2207 | A | 2208 | G | 2210 | * | C | 2235 | G | 2236 | C | 2237 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAC*GUG | 7 |
| GAUA*UGC | 1 |
| CUGA*UGG | 1 |
| GCGG*UAC | 1 |
| GAGUG*UUC | 1 |
| GAAUG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 7 |
| AU*G | 1 |
| UG*G | 1 |
| CG*A | 1 |
| AGU*U | 1 |
| AAU*G | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with extra pair (11)
- Other IL (1)
- Basepair signature
- cWW-tSH-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.35 | Max 0.66
Coloring options: