Motif IL_87876.1 Version IL_87876.1 of this group appears in releases 3.7 to 3.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_331 | 5J7L | 0.2076 | 1 | Single bulged U | DA | LSU rRNA | U | 2202 | G | 2204 | * | U | 2220 | G | 2221 | cWW | cWW |
| 2 | IL_4V8P_221 | 4V8P | 0.0000 | 1 | Single bulged A (H) | D1 | LSU rRNA | U | 1424 | G | 1426 | * | U | 1437 | A | 1438 | cWW | cWW |
| 3 | IL_4V88_469 | 4V88 | 0.6600 | 1 | Single bulged U | A6 | SSU rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW |
| 4 | IL_4IOA_099 | 4IOA | 0.8538 | 3 | Multiple bulged bases (H) | X | LSU rRNA | C | 2674 | U | 2675 | * | A | 2690 | G | 2694 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*UG | 1 |
| UUG*UA | 1 |
| UA*UUG | 1 |
| CU*ACAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U* | 2 |
| *U | 1 |
| *CAU | 1 |
- Annotations
-
- Single bulged U (2)
- Multiple bulged bases (H) (1)
- Single bulged A (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.50 | Max 0.92
Coloring options: